Variant report

Variant	rs4768166
Chromosome Location	chr12:40045533-40045534
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10047563	0.85[EUR][1000 genomes]
rs10747825	0.91[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10783969	0.92[CEU][hapmap]
rs10783993	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10783998	0.85[EUR][1000 genomes]
rs10784001	0.91[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10784016	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10784019	0.92[CEU][hapmap]
rs10877335	0.85[EUR][1000 genomes]
rs10877337	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10877369	0.81[EUR][1000 genomes]
rs10877410	0.80[EUR][1000 genomes]
rs11172998	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11173013	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs11173257	0.80[EUR][1000 genomes]
rs11173260	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11173262	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11173376	0.80[EUR][1000 genomes]
rs11173394	0.82[AFR][1000 genomes]
rs11173423	0.82[AFR][1000 genomes]
rs11173428	0.82[AFR][1000 genomes]
rs11173433	0.82[AFR][1000 genomes]
rs11173434	0.82[AFR][1000 genomes]
rs11173440	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11173446	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11173459	0.91[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11173494	0.91[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11173507	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs11173541	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11173551	0.82[AFR][1000 genomes]
rs11173553	0.82[AFR][1000 genomes]
rs12229203	0.91[CEU][hapmap]
rs12229301	0.92[CEU][hapmap]
rs12229418	0.92[CEU][hapmap];0.82[AFR][1000 genomes]
rs12230687	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12825223	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4077987	0.82[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4129365	0.91[CEU][hapmap]
rs4337105	0.92[CEU][hapmap]
rs4357762	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs4417382	0.92[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4495951	0.91[CEU][hapmap]
rs4594067	0.91[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4768168	0.83[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4768169	0.84[CEU][hapmap]
rs4768170	0.82[EUR][1000 genomes]
rs57244766	0.80[EUR][1000 genomes]
rs58418587	0.82[EUR][1000 genomes]
rs61931185	0.82[AFR][1000 genomes]
rs61933102	0.85[EUR][1000 genomes]
rs61933154	0.82[EUR][1000 genomes]
rs61933157	0.82[AFR][1000 genomes]
rs61933158	0.82[AFR][1000 genomes]
rs6421191	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs6421195	0.85[EUR][1000 genomes]
rs6421196	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs6421197	0.85[EUR][1000 genomes]
rs6421198	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6581263	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs6581265	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6581266	0.85[EUR][1000 genomes]
rs6581270	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs6581271	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs6581272	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6581294	0.82[EUR][1000 genomes]
rs7136929	0.81[EUR][1000 genomes]
rs7296585	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7485345	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7486196	0.88[AFR][1000 genomes]
rs7486621	0.85[EUR][1000 genomes]
rs7487999	0.92[CEU][hapmap]
rs7956577	0.85[EUR][1000 genomes]
rs7959905	0.85[EUR][1000 genomes]
rs7961070	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7961346	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7973312	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7980636	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9325166	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1037457	chr12:39898349-40245401	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv541480	chr12:39898349-40245401	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv899014	chr12:39946354-40068896	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv899015	chr12:39946354-40118249	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv899017	chr12:39949147-40081619	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv899018	chr12:39949147-40111761	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv899021	chr12:39989172-40053423	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv899022	chr12:40014427-40111761	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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