Variant report

Variant	rs4768858
Chromosome Location	chr12:51039818-51039819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51036681..51039761-chr12:51039769..51043121,4	K562	blood:
2	chr12:51035107..51037679-chr12:51038091..51041235,4	MCF-7	breast:
3	chr12:51036681..51038274-chr12:51039609..51041269,2	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1003033	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10431486	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10431535	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444547	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10459233	0.86[EUR][1000 genomes]
rs10459234	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10459235	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10506294	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10506295	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10747584	0.86[EUR][1000 genomes]
rs10747585	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10747587	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10783369	0.89[EUR][1000 genomes]
rs10783370	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10783371	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10783372	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10783373	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10783374	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10783378	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10783381	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10783382	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10783383	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10783384	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10876042	0.85[EUR][1000 genomes]
rs10876043	0.87[EUR][1000 genomes]
rs10876047	0.89[EUR][1000 genomes]
rs10876051	0.89[EUR][1000 genomes]
rs10876052	0.89[EUR][1000 genomes]
rs10876053	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876056	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10876058	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876060	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10876061	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876063	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876065	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876067	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10876068	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10876070	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876071	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876072	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876073	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10876075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10876076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11169479	0.89[EUR][1000 genomes]
rs11169480	0.89[EUR][1000 genomes]
rs11169481	0.88[EUR][1000 genomes]
rs11169483	0.84[EUR][1000 genomes]
rs11169487	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11169493	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11169498	0.87[EUR][1000 genomes]
rs11169505	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11169507	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11169515	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11169528	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11169532	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11169537	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11169538	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11169539	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11613488	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11615933	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12230242	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12231309	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12231317	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12580051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12580479	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12582712	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12809086	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12827022	0.87[EUR][1000 genomes]
rs17124930	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2090851	0.81[EUR][1000 genomes]
rs2243571	0.87[EUR][1000 genomes]
rs2684908	0.83[EUR][1000 genomes]
rs2700478	0.86[EUR][1000 genomes]
rs34867510	0.86[EUR][1000 genomes]
rs35845404	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3742063	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3742064	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3825402	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3893353	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3935869	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4131769	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4238106	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4238107	0.80[AFR][1000 genomes]
rs4238108	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4516034	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768850	0.89[EUR][1000 genomes]
rs4768852	0.88[EUR][1000 genomes]
rs4768853	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768884	0.89[EUR][1000 genomes]
rs4768888	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768889	0.89[EUR][1000 genomes]
rs4768892	0.89[EUR][1000 genomes]
rs4768893	0.89[EUR][1000 genomes]
rs4768895	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768899	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4768904	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4768906	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4768907	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768911	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4768912	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768913	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768914	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55680342	0.87[EUR][1000 genomes]
rs55877451	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61926275	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7134976	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7138604	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7305375	0.84[EUR][1000 genomes]
rs7307419	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7956591	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs876078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs876079	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs876080	0.87[EUR][1000 genomes]
rs952318	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9788159	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
2	chr12:51014600-51041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
4	chr12:51016000-51065000	Weak transcription	Esophagus	oesophagus
5	chr12:51017800-51042800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr12:51019600-51046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:51021600-51041000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr12:51021800-51041000	Weak transcription	Fetal Kidney	kidney
9	chr12:51021800-51041400	Weak transcription	Right Ventricle	heart
10	chr12:51022000-51065200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr12:51022000-51068400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr12:51022400-51055200	Weak transcription	Ovary	ovary
13	chr12:51022600-51054000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr12:51022600-51064600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr12:51028400-51092400	Weak transcription	Gastric	stomach
16	chr12:51030800-51064800	Weak transcription	Spleen	Spleen
17	chr12:51030800-51065000	Weak transcription	Left Ventricle	heart
18	chr12:51031200-51040600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr12:51031200-51041000	Weak transcription	Brain Germinal Matrix	brain
20	chr12:51031400-51042800	Weak transcription	Fetal Brain Female	brain
21	chr12:51031400-51058800	Weak transcription	Small Intestine	intestine
22	chr12:51031400-51064800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr12:51031800-51068200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr12:51032000-51041200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr12:51032000-51043200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr12:51032200-51040400	Weak transcription	Fetal Heart	heart
27	chr12:51032200-51041000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:51032200-51065000	Weak transcription	Fetal Lung	lung
29	chr12:51032200-51069000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:51032600-51055000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr12:51034200-51053400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr12:51034800-51040800	Weak transcription	GM12878-XiMat	blood
33	chr12:51035600-51040400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr12:51035600-51053600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:51035600-51054000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr12:51035600-51064600	Weak transcription	Lung	lung
37	chr12:51036000-51040600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr12:51036000-51040600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr12:51036000-51068200	Weak transcription	Thymus	Thymus
40	chr12:51036200-51040800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr12:51036200-51041000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr12:51036200-51041000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr12:51036200-51041000	Weak transcription	Brain Anterior Caudate	brain
44	chr12:51036200-51041000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:51036200-51041000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr12:51036200-51041000	Weak transcription	HSMMtube	muscle
47	chr12:51036200-51041200	Weak transcription	Stomach Mucosa	stomach
48	chr12:51036200-51045200	Weak transcription	HUVEC	blood vessel
49	chr12:51036200-51052600	Weak transcription	Dnd41	blood
50	chr12:51036200-51052800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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