Variant report

Variant	rs4768884
Chromosome Location	chr12:50920510-50920511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:50919290..50923217-chr12:50923759..50928110,5	MCF-7	breast:
2	chr12:50918697..50921193-chr12:50921774..50924636,2	K562	blood:
3	chr12:50919251..50921219-chr12:50974767..50977013,2	MCF-7	breast:
4	chr12:50900950..50904807-chr12:50918762..50923043,5	MCF-7	breast:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10431486	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10431535	0.88[EUR][1000 genomes]
rs10444547	0.91[EUR][1000 genomes]
rs10459233	0.97[EUR][1000 genomes]
rs10459234	0.82[EUR][1000 genomes]
rs10459235	0.85[EUR][1000 genomes]
rs10506294	0.85[EUR][1000 genomes]
rs10506295	0.84[EUR][1000 genomes]
rs10747584	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10747585	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10747587	0.85[EUR][1000 genomes]
rs10783369	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10783370	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10783371	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10783372	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10783373	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10783374	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10783375	0.87[EUR][1000 genomes]
rs10783378	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10783381	0.92[EUR][1000 genomes]
rs10783382	0.87[EUR][1000 genomes]
rs10783383	0.85[EUR][1000 genomes]
rs10783384	0.84[EUR][1000 genomes]
rs10876042	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10876043	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10876047	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10876051	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10876052	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10876053	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10876056	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10876058	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876060	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10876061	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10876063	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876064	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10876065	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876070	0.92[EUR][1000 genomes]
rs10876071	0.92[EUR][1000 genomes]
rs10876072	0.92[EUR][1000 genomes]
rs10876073	0.91[EUR][1000 genomes]
rs10876075	0.89[EUR][1000 genomes]
rs10876076	0.89[EUR][1000 genomes]
rs11169457	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11169479	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11169480	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169481	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11169483	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11169487	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11169493	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11169498	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11169505	0.91[EUR][1000 genomes]
rs11169507	0.92[EUR][1000 genomes]
rs11169515	0.87[EUR][1000 genomes]
rs11169528	0.85[EUR][1000 genomes]
rs11169532	0.84[EUR][1000 genomes]
rs11169537	0.84[EUR][1000 genomes]
rs11169538	0.81[EUR][1000 genomes]
rs11169539	0.81[EUR][1000 genomes]
rs11613488	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11615933	0.85[EUR][1000 genomes]
rs12230242	0.91[EUR][1000 genomes]
rs12231309	0.89[EUR][1000 genomes]
rs12231317	0.89[EUR][1000 genomes]
rs12580051	0.89[EUR][1000 genomes]
rs12582712	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12809086	0.85[EUR][1000 genomes]
rs12827022	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17124930	0.84[EUR][1000 genomes]
rs34867510	0.96[EUR][1000 genomes]
rs35845404	0.81[EUR][1000 genomes]
rs3742063	0.81[EUR][1000 genomes]
rs3742064	0.81[EUR][1000 genomes]
rs3825402	0.81[EUR][1000 genomes]
rs3893353	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3935138	0.87[EUR][1000 genomes]
rs3935869	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4131769	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4238106	0.92[EUR][1000 genomes]
rs4238108	0.85[EUR][1000 genomes]
rs4516034	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4617661	0.82[EUR][1000 genomes]
rs4768847	0.82[EUR][1000 genomes]
rs4768850	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768852	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768853	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4768858	0.89[EUR][1000 genomes]
rs4768888	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4768889	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4768890	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768892	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768893	1.00[EUR][1000 genomes]
rs4768895	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4768899	0.92[EUR][1000 genomes]
rs4768906	0.85[EUR][1000 genomes]
rs4768907	0.84[EUR][1000 genomes]
rs4768911	0.81[EUR][1000 genomes]
rs4768912	0.84[EUR][1000 genomes]
rs4768913	0.84[EUR][1000 genomes]
rs4768914	0.80[EUR][1000 genomes]
rs55680342	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55877451	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61926275	0.85[EUR][1000 genomes]
rs6580756	0.81[EUR][1000 genomes]
rs67092086	0.87[EUR][1000 genomes]
rs7134976	0.92[EUR][1000 genomes]
rs7138604	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7307419	0.92[EUR][1000 genomes]
rs7316864	0.87[EUR][1000 genomes]
rs7397999	0.87[EUR][1000 genomes]
rs7956591	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs876078	0.89[EUR][1000 genomes]
rs876079	0.89[EUR][1000 genomes]
rs952318	0.91[EUR][1000 genomes]
rs9788159	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50900000-50925400	Weak transcription	Esophagus	oesophagus
2	chr12:50900600-50932000	Weak transcription	Fetal Kidney	kidney
3	chr12:50901400-50925600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr12:50903400-50925800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:50903600-50922800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:50909000-50925400	Weak transcription	Lung	lung
7	chr12:50910800-50925400	Weak transcription	Placenta	Placenta
8	chr12:50911400-50924200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:50911400-50926400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:50911600-50920800	Weak transcription	Fetal Intestine Large	intestine
11	chr12:50911600-50939800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:50912000-50920800	Weak transcription	Hela-S3	cervix
13	chr12:50912000-50922800	Weak transcription	Psoas Muscle	Psoas
14	chr12:50912000-50923000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:50912000-50924200	Weak transcription	HMEC	breast
16	chr12:50912000-50925400	Weak transcription	Dnd41	blood
17	chr12:50912000-50926000	Weak transcription	Osteobl	bone
18	chr12:50912000-50926400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr12:50912200-50925200	Weak transcription	HUVEC	blood vessel
20	chr12:50912600-50922800	Weak transcription	Small Intestine	intestine
21	chr12:50912800-50922400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr12:50912800-50922800	Weak transcription	Left Ventricle	heart
23	chr12:50914800-50920800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr12:50914800-50921000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr12:50914800-50922200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:50914800-50922400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr12:50914800-50926800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr12:50915000-50924400	Weak transcription	Fetal Thymus	thymus
29	chr12:50915200-50920800	Weak transcription	Primary T cells from cord blood	blood
30	chr12:50915600-50925800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr12:50915600-50926400	Weak transcription	Colon Smooth Muscle	Colon
32	chr12:50916200-50925400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr12:50916400-50926000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr12:50916400-50931600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:50917200-50923600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr12:50918200-50921200	Strong transcription	NHEK	skin
37	chr12:50918200-50921800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr12:50918200-50922000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr12:50918200-50922000	Enhancers	Pancreas	Pancrea
40	chr12:50918400-50921600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr12:50918400-50922200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr12:50918400-50922400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr12:50918400-50923400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr12:50918400-50925400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr12:50918600-50920600	Enhancers	Fetal Muscle Trunk	muscle
46	chr12:50918600-50920600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr12:50918600-50920800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr12:50918600-50921800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr12:50918600-50922800	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr12:50918600-50925200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links