Variant report

Variant	rs4768908
Chromosome Location	chr12:51119405-51119406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51112975..51115564-chr12:51117449..51119564,2	MCF-7	breast:
2	chr12:51115470..51119034-chr12:51119243..51122406,3	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10431532	1.00[EUR][1000 genomes]
rs10431533	1.00[EUR][1000 genomes]
rs10732734	1.00[EUR][1000 genomes]
rs10747582	1.00[EUR][1000 genomes]
rs10876040	1.00[EUR][1000 genomes]
rs10876079	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1096028	1.00[EUR][1000 genomes]
rs1096029	1.00[EUR][1000 genomes]
rs11169464	1.00[EUR][1000 genomes]
rs12146806	1.00[EUR][1000 genomes]
rs12300290	1.00[EUR][1000 genomes]
rs12302812	1.00[EUR][1000 genomes]
rs12321891	1.00[EUR][1000 genomes]
rs12322925	1.00[EUR][1000 genomes]
rs1464436	1.00[EUR][1000 genomes]
rs1465860	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1595597	1.00[EUR][1000 genomes]
rs1642998	1.00[EUR][1000 genomes]
rs1866422	0.87[AMR][1000 genomes]
rs1879622	1.00[EUR][1000 genomes]
rs1975351	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2037453	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2253376	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2359188	1.00[EUR][1000 genomes]
rs2464125	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs2468378	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2554869	1.00[EUR][1000 genomes]
rs2684895	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2684896	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2684897	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2684904	1.00[EUR][1000 genomes]
rs2684905	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2684907	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2684909	0.81[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2700476	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2700477	1.00[EUR][1000 genomes]
rs2700481	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2700483	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731435	0.88[YRI][hapmap]
rs2731437	0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731438	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2731441	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731444	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731445	1.00[EUR][1000 genomes]
rs2731446	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731447	0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2731448	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs4259895	1.00[EUR][1000 genomes]
rs4293196	1.00[EUR][1000 genomes]
rs4768896	1.00[EUR][1000 genomes]
rs4768897	1.00[EUR][1000 genomes]
rs4768898	1.00[EUR][1000 genomes]
rs4768910	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768919	1.00[EUR][1000 genomes]
rs6421169	1.00[EUR][1000 genomes]
rs6580758	1.00[EUR][1000 genomes]
rs6580759	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs6580762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7310522	1.00[EUR][1000 genomes]
rs7312349	1.00[EUR][1000 genomes]
rs7313783	1.00[EUR][1000 genomes]
rs829116	1.00[EUR][1000 genomes]
rs829117	1.00[EUR][1000 genomes]
rs829118	1.00[EUR][1000 genomes]
rs829119	1.00[EUR][1000 genomes]
rs829121	1.00[EUR][1000 genomes]
rs829136	1.00[EUR][1000 genomes]
rs829137	1.00[EUR][1000 genomes]
rs829138	1.00[EUR][1000 genomes]
rs939632	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs939634	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs9634263	1.00[EUR][1000 genomes]
rs9804978	1.00[EUR][1000 genomes]
rs9943796	1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
9	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr12:51093600-51128600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
20	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr12:51098800-51128200	Strong transcription	Brain Germinal Matrix	brain
22	chr12:51101000-51144800	Strong transcription	Fetal Stomach	stomach
23	chr12:51105400-51133600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr12:51108000-51120200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:51108200-51142200	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr12:51109400-51120400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:51109400-51124200	Weak transcription	Stomach Mucosa	stomach
28	chr12:51110600-51141200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr12:51110600-51144800	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr12:51110800-51142200	Strong transcription	Lung	lung
31	chr12:51111400-51120200	Strong transcription	Stomach Smooth Muscle	stomach
32	chr12:51111400-51141600	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr12:51111400-51141800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr12:51111400-51144600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr12:51111600-51142200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr12:51111800-51126600	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr12:51111800-51136600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:51112000-51119600	Strong transcription	Brain Anterior Caudate	brain
39	chr12:51112000-51141800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr12:51112000-51142000	Strong transcription	Dnd41	blood
41	chr12:51112000-51144800	Strong transcription	Primary T cells from cord blood	blood
42	chr12:51112200-51127000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr12:51112200-51127800	Strong transcription	Fetal Brain Female	brain
44	chr12:51112200-51144800	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr12:51112400-51120000	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr12:51113800-51120200	Strong transcription	NHEK	skin
47	chr12:51114000-51123600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr12:51114200-51120000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr12:51114200-51120000	Strong transcription	HMEC	breast
50	chr12:51114200-51123000	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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