Variant report

Variant	rs4768909
Chromosome Location	chr12:51123781-51123782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51121320..51125390-chr12:51155550..51158232,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123268	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10506296	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10735827	0.85[ASN][1000 genomes]
rs10747592	0.85[ASN][1000 genomes]
rs10747593	0.80[ASN][1000 genomes]
rs10783368	0.82[EUR][1000 genomes]
rs10783388	0.85[ASN][1000 genomes]
rs10876048	0.82[EUR][1000 genomes]
rs10876054	0.82[EUR][1000 genomes]
rs10876082	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876083	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876085	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10876088	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876091	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11169551	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11169553	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11169556	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12320201	0.82[EUR][1000 genomes]
rs1521515	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1521517	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1561422	0.85[ASN][1000 genomes]
rs17124888	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17124907	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1815010	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246840	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252595	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2684886	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684890	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684891	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2684902	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2684906	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2700486	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2947617	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3803181	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825401	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129355	0.82[EUR][1000 genomes]
rs4143663	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768887	0.82[EUR][1000 genomes]
rs4768915	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4768920	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56818625	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57328764	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58301497	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58943330	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59284993	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60908906	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61926300	0.84[ASN][1000 genomes]
rs6580766	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580767	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580768	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580770	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7131993	0.82[EUR][1000 genomes]
rs7132443	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7135222	0.82[EUR][1000 genomes]
rs7301125	0.82[EUR][1000 genomes]
rs7302749	0.82[EUR][1000 genomes]
rs7303202	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7304793	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7308872	0.99[ASN][1000 genomes]
rs7310507	0.86[ASN][1000 genomes]
rs7487150	0.82[ASN][1000 genomes]
rs7955310	0.82[EUR][1000 genomes]
rs7959129	0.83[ASN][1000 genomes]
rs7964642	0.83[ASN][1000 genomes]
rs7969251	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7979474	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs829125	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs865490	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs939631	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs951591	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9634264	0.82[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
8	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr12:51093600-51128600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
18	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr12:51098800-51128200	Strong transcription	Brain Germinal Matrix	brain
20	chr12:51101000-51144800	Strong transcription	Fetal Stomach	stomach
21	chr12:51105400-51133600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr12:51108200-51142200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr12:51109400-51124200	Weak transcription	Stomach Mucosa	stomach
24	chr12:51110600-51141200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:51110600-51144800	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr12:51110800-51142200	Strong transcription	Lung	lung
27	chr12:51111400-51141600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:51111400-51141800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:51111400-51144600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr12:51111600-51142200	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr12:51111800-51126600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr12:51111800-51136600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr12:51112000-51141800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr12:51112000-51142000	Strong transcription	Dnd41	blood
35	chr12:51112000-51144800	Strong transcription	Primary T cells from cord blood	blood
36	chr12:51112200-51127000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr12:51112200-51127800	Strong transcription	Fetal Brain Female	brain
38	chr12:51112200-51144800	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr12:51114200-51144800	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr12:51114400-51124000	Strong transcription	Esophagus	oesophagus
41	chr12:51114400-51128000	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr12:51114600-51127800	Strong transcription	Thymus	Thymus
43	chr12:51114800-51126200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr12:51114800-51126800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr12:51114800-51127600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr12:51114800-51129000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr12:51114800-51141800	Strong transcription	HepG2	liver
48	chr12:51114800-51142400	Strong transcription	Duodenum Mucosa	Duodenum
49	chr12:51116200-51140200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr12:51116200-51144000	Strong transcription	Fetal Intestine Large	intestine

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