Variant report

Variant	rs4768915
Chromosome Location	chr12:51141883-51141884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:51133005..51135454-chr12:51141741..51143459,2	MCF-7	breast:
2	chr12:51139833..51142422-chr12:51145085..51147919,2	MCF-7	breast:
3	chr12:51137579..51140558-chr12:51140952..51144654,5	K562	blood:
4	chr12:51138761..51142670-chr12:51152791..51156201,3	K562	blood:
5	chr12:51140868..51142925-chr12:51146506..51148272,2	K562	blood:
6	chr12:51141171..51144014-chr12:51148737..51150376,2	K562	blood:
7	chr12:51137634..51140155-chr12:51140406..51142062,2	MCF-7	breast:
8	chr12:51138457..51146051-chr12:51156159..51159814,11	MCF-7	breast:
9	chr12:51138743..51142670-chr12:51153238..51158236,5	K562	blood:
10	chr12:51139062..51150273-chr12:51151292..51159466,16	MCF-7	breast:
11	chr12:51141425..51144014-chr12:51146772..51150237,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000123268	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10506296	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10735827	0.80[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10747592	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10783368	0.90[EUR][1000 genomes]
rs10783388	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10783390	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs10876048	0.90[EUR][1000 genomes]
rs10876054	0.90[EUR][1000 genomes]
rs10876057	0.82[EUR][1000 genomes]
rs10876082	0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876083	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876085	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10876088	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876091	0.91[EUR][1000 genomes]
rs11169551	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11169553	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11169556	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12099615	0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs12296379	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs12320201	0.90[EUR][1000 genomes]
rs13328926	0.86[EUR][1000 genomes]
rs1402693	0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1521515	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1521517	0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1561422	0.80[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs17124888	0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17124907	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1815010	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1996750	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2246840	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2252595	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2684886	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2684890	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2684891	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2684902	0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2684906	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2700486	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28414775	0.86[EUR][1000 genomes]
rs28479152	0.86[EUR][1000 genomes]
rs2947617	0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3803181	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3825401	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4129355	0.90[EUR][1000 genomes]
rs4143663	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4306347	0.86[EUR][1000 genomes]
rs4562889	0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs4768887	0.90[EUR][1000 genomes]
rs4768909	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4768920	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56753963	0.86[EUR][1000 genomes]
rs56818625	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57328764	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57512759	0.86[EUR][1000 genomes]
rs58301497	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58943330	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59194948	0.86[EUR][1000 genomes]
rs59284993	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59683461	0.86[EUR][1000 genomes]
rs60239257	0.86[EUR][1000 genomes]
rs60494920	0.86[EUR][1000 genomes]
rs60908906	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6580766	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580767	0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580768	0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580770	0.85[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7131993	0.90[EUR][1000 genomes]
rs7132443	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7135222	0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs7301125	0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs7302749	0.90[EUR][1000 genomes]
rs7303202	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7304793	0.90[EUR][1000 genomes]
rs7306387	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7308872	0.90[ASN][1000 genomes]
rs7310507	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7487645	0.86[EUR][1000 genomes]
rs7953880	0.86[EUR][1000 genomes]
rs7955310	0.90[EUR][1000 genomes]
rs7959129	0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs7969251	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7978443	0.86[EUR][1000 genomes]
rs7979184	0.81[EUR][1000 genomes]
rs7979474	0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs829125	0.85[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs865490	0.95[EUR][1000 genomes]
rs939631	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs951591	0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9634264	0.82[JPT][hapmap];0.90[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
9	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr12:51101000-51144800	Strong transcription	Fetal Stomach	stomach
11	chr12:51108200-51142200	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:51110600-51144800	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr12:51110800-51142200	Strong transcription	Lung	lung
14	chr12:51111400-51144600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr12:51111600-51142200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr12:51112000-51142000	Strong transcription	Dnd41	blood
17	chr12:51112000-51144800	Strong transcription	Primary T cells from cord blood	blood
18	chr12:51112200-51144800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr12:51114200-51144800	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr12:51114800-51142400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr12:51116200-51144000	Strong transcription	Fetal Intestine Large	intestine
22	chr12:51116800-51144000	Strong transcription	Primary B cells from peripheral blood	blood
23	chr12:51116800-51144800	Strong transcription	Primary B cells from cord blood	blood
24	chr12:51118200-51143600	Strong transcription	Adipose Nuclei	Adipose
25	chr12:51119200-51144600	Strong transcription	Liver	Liver
26	chr12:51120800-51145400	Strong transcription	Fetal Thymus	thymus
27	chr12:51121400-51142200	Strong transcription	GM12878-XiMat	blood
28	chr12:51121400-51145400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr12:51121600-51142000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr12:51121600-51142400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr12:51123000-51142400	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr12:51126600-51145400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:51126600-51146600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr12:51128400-51142000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr12:51128600-51142400	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr12:51128600-51144200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr12:51128800-51142000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:51128800-51142000	Strong transcription	Ovary	ovary
39	chr12:51129600-51142600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:51129600-51144600	Strong transcription	Brain Anterior Caudate	brain
41	chr12:51129800-51142000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr12:51129800-51142200	Strong transcription	Rectal Smooth Muscle	rectum
43	chr12:51130000-51142200	Strong transcription	Brain Angular Gyrus	brain
44	chr12:51130000-51142200	Strong transcription	Thymus	Thymus
45	chr12:51130000-51145400	Strong transcription	Stomach Smooth Muscle	stomach
46	chr12:51130200-51142200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr12:51130200-51142200	Strong transcription	Brain Cingulate Gyrus	brain
48	chr12:51130200-51142400	Strong transcription	Fetal Lung	lung
49	chr12:51132600-51142200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr12:51132600-51142200	Strong transcription	Brain Hippocampus Middle	brain

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