Variant report

Variant	rs4773155
Chromosome Location	chr13:110971066-110971067
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4773156	0.92[CEU][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	esv3402001	chr13:110967451-110971649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110961400-110971400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:110962000-110971400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:110962000-110971400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:110962000-110972200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr13:110962000-110972800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:110962000-110978600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:110962600-110989200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr13:110963600-110972000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr13:110964400-110975600	Weak transcription	Colonic Mucosa	Colon
10	chr13:110964600-110972800	Enhancers	Right Atrium	heart
11	chr13:110965200-110971800	Weak transcription	Brain Hippocampus Middle	brain
12	chr13:110965200-110976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:110965400-110972400	Weak transcription	Psoas Muscle	Psoas
14	chr13:110965600-110971800	Weak transcription	HSMMtube	muscle
15	chr13:110966600-110976000	Weak transcription	Brain Anterior Caudate	brain
16	chr13:110966800-110971200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:110966800-110971400	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr13:110966800-110979400	Weak transcription	Fetal Brain Male	brain
19	chr13:110967200-110971800	Weak transcription	Esophagus	oesophagus
20	chr13:110967200-110971800	Weak transcription	NHDF-Ad	bronchial
21	chr13:110968200-110971600	Strong transcription	Osteobl	bone
22	chr13:110968400-110971200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:110968400-110971600	Strong transcription	Fetal Intestine Small	intestine
24	chr13:110968800-110972200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr13:110969400-110971400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr13:110969600-110971200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:110969600-110971200	Genic enhancers	NH-A	brain
28	chr13:110969600-110979000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:110969800-110971200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr13:110969800-110971200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:110969800-110971400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr13:110969800-110971400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr13:110969800-110971400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr13:110969800-110971400	Weak transcription	Ovary	ovary
35	chr13:110969800-110971400	Weak transcription	Pancreas	Pancrea
36	chr13:110969800-110971400	Weak transcription	Spleen	Spleen
37	chr13:110969800-110971600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr13:110969800-110971600	Weak transcription	Fetal Kidney	kidney
39	chr13:110969800-110971800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr13:110969800-110971800	Weak transcription	Fetal Lung	lung
41	chr13:110969800-110972000	Weak transcription	Aorta	Aorta
42	chr13:110969800-110972800	Enhancers	Left Ventricle	heart
43	chr13:110969800-110973800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr13:110969800-110975600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr13:110969800-110975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr13:110969800-110980200	Enhancers	Rectal Smooth Muscle	rectum
47	chr13:110969800-110983200	Enhancers	Fetal Heart	heart
48	chr13:110970000-110971200	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr13:110970000-110971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr13:110970000-110971800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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