Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10518967	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12439244	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12439277	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12439347	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12442501	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1618701	0.90[ASN][1000 genomes]
rs1663253	0.83[ASN][1000 genomes]
rs1663254	0.84[ASN][1000 genomes]
rs1663255	0.88[ASN][1000 genomes]
rs2017566	0.83[ASN][1000 genomes]
rs2414551	0.90[ASN][1000 genomes]
rs2414552	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3742958	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4350519	0.86[ASN][1000 genomes]
rs4375604	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4775025	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4775026	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58238893	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7162995	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173910	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7180071	0.93[ASN][1000 genomes]
rs8032239	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9788656	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58499200-58503200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:58500400-58502200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:58500400-58502400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:58500400-58502800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:58500600-58502200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:58500600-58502200	Enhancers	NHDF-Ad	bronchial
7	chr15:58500600-58502800	Enhancers	NHEK	skin
8	chr15:58500800-58502200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:58500800-58502400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:58500800-58502400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:58500800-58502600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:58500800-58503000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:58501000-58502200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:58501000-58502200	Enhancers	NHLF	lung
15	chr15:58501000-58502200	Enhancers	Osteobl	bone
16	chr15:58501000-58503000	Enhancers	HMEC	breast
17	chr15:58501200-58502200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:58501400-58502200	Enhancers	HUVEC	blood vessel
19	chr15:58502000-58502400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:58502000-58505200	Weak transcription	Right Atrium	heart

Quick Search: