Variant report

Variant	rs4776114
Chromosome Location	chr15:53414103-53414104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1152717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508027	0.89[ASN][1000 genomes]
rs1508043	0.96[ASN][1000 genomes]
rs497321	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs518005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543018	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs554704	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs557694	0.85[AFR][1000 genomes]
rs578462	0.85[YRI][hapmap]
rs594670	0.89[AFR][1000 genomes]
rs653511	0.81[AFR][1000 genomes]
rs689932	1.00[ASN][1000 genomes]
rs690535	0.83[YRI][hapmap]
rs7171329	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8028769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833007	chr15:53264564-53453525	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904221	chr15:53279378-53434365	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1050535	chr15:53352572-53472957	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1039762	chr15:53354285-53414479	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53411400-53415400	Enhancers	Dnd41	blood
2	chr15:53413000-53414200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:53413200-53421200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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