Variant report

Variant	rs4778730
Chromosome Location	chr15:79253321-79253322
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12443215	0.97[EUR][1000 genomes]
rs1550065	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs16970350	0.85[CHB][hapmap];0.87[CHD][hapmap];0.85[ASN][1000 genomes]
rs16970356	1.00[CEU][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]
rs2002832	0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs2869815	0.88[ASN][1000 genomes]
rs3759857	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4779161	0.89[ASN][1000 genomes]
rs61117503	0.92[EUR][1000 genomes]
rs7163131	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv904433	chr15:79243571-79310288	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79244000-79263400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:79244000-79288000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:79244200-79253400	Weak transcription	Brain Angular Gyrus	brain
4	chr15:79250800-79263400	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:79252800-79254200	Strong transcription	Brain Cingulate Gyrus	brain
6	chr15:79253000-79260400	Weak transcription	Pancreas	Pancrea
7	chr15:79253000-79265400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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