Variant report

Variant	rs4779081
Chromosome Location	chr15:79209332-79209333
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:79208011..79209881-chr15:79210169..79212427,2	K562	blood:
2	chr15:79200824..79204913-chr15:79206571..79210692,6	K562	blood:
3	chr15:79207678..79209459-chr15:79218963..79221079,2	MCF-7	breast:
4	chr15:79208196..79212338-chr15:79223763..79228082,3	K562	blood:
5	chr15:79208450..79211026-chr15:79212456..79216511,4	K562	blood:
6	chr15:79200824..79204209-chr15:79206571..79210953,6	K562	blood:
7	chr15:79208258..79210715-chr15:79217423..79220047,2	K562	blood:
8	chr15:79203581..79205998-chr15:79208517..79210906,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000103811	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10519214	0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1075965	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16970190	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16970207	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16970215	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16970216	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16970248	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1808757	0.80[AMR][1000 genomes]
rs3803545	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3825930	0.85[AMR][1000 genomes]
rs4778627	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4778645	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4778659	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4778858	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4778952	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4779082	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56963875	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58105551	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58257692	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58807257	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59238093	0.85[AMR][1000 genomes]
rs60009001	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61009187	0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61504829	0.85[AMR][1000 genomes]
rs7171615	0.91[ASN][1000 genomes]
rs73470371	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73470375	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73470383	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7402463	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7402487	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79171200-79215600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:79172400-79216200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:79176800-79215200	Strong transcription	Dnd41	blood
4	chr15:79178200-79219400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:79187400-79213600	Weak transcription	Small Intestine	intestine
6	chr15:79188000-79209400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:79190000-79222200	Strong transcription	Thymus	Thymus
8	chr15:79197200-79213600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:79199000-79213800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:79199600-79218800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:79199800-79229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:79202400-79213400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:79202600-79211800	Weak transcription	Fetal Brain Male	brain
14	chr15:79202800-79213200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:79202800-79213800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr15:79203600-79231000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr15:79204200-79211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:79204800-79213600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:79204800-79219600	Strong transcription	Fetal Brain Female	brain
20	chr15:79205000-79219000	Weak transcription	Fetal Kidney	kidney
21	chr15:79205400-79210800	Weak transcription	Fetal Lung	lung
22	chr15:79205400-79227800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:79205800-79210800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:79205800-79223600	Weak transcription	Stomach Mucosa	stomach
25	chr15:79206000-79209600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:79206000-79210400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr15:79206000-79211000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:79206200-79209600	Genic enhancers	Fetal Muscle Leg	muscle
29	chr15:79206200-79210200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:79206200-79211200	Strong transcription	HUVEC	blood vessel
31	chr15:79206400-79210800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr15:79206400-79211800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:79206600-79209600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:79206600-79210400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr15:79206600-79213600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:79206800-79210200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:79206800-79210200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:79206800-79213600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:79207000-79210200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:79207000-79211600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:79207000-79211600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:79207000-79213400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:79207000-79213600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:79207000-79213600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:79207000-79213600	Weak transcription	Gastric	stomach
46	chr15:79207400-79210400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:79207600-79209400	Enhancers	K562	blood
48	chr15:79207800-79209600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:79207800-79210200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr15:79207800-79213600	Weak transcription	Psoas Muscle	Psoas

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