Variant report

Variant	rs4779082
Chromosome Location	chr15:79209644-79209645
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79208011..79209881-chr15:79210169..79212427,2	K562	blood:
2	chr15:79200824..79204913-chr15:79206571..79210692,6	K562	blood:
3	chr15:79208196..79212338-chr15:79223763..79228082,3	K562	blood:
4	chr15:79208450..79211026-chr15:79212456..79216511,4	K562	blood:
5	chr15:79200824..79204209-chr15:79206571..79210953,6	K562	blood:
6	chr15:79208258..79210715-chr15:79217423..79220047,2	K562	blood:
7	chr15:79203581..79205998-chr15:79208517..79210906,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103811	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10519214	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1075965	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16970190	1.00[CHB][hapmap];0.83[JPT][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16970207	1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16970215	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16970216	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16970248	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3803545	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3825930	0.83[AMR][1000 genomes]
rs4778627	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4778645	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4778659	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4778858	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4778952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4779081	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56963875	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58105551	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58257692	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58807257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59238093	0.83[AMR][1000 genomes]
rs60009001	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61009187	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61504829	0.83[AMR][1000 genomes]
rs7171615	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73470371	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73470375	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73470383	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7402463	1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7402487	0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79171200-79215600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:79172400-79216200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:79176800-79215200	Strong transcription	Dnd41	blood
4	chr15:79178200-79219400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:79187400-79213600	Weak transcription	Small Intestine	intestine
6	chr15:79190000-79222200	Strong transcription	Thymus	Thymus
7	chr15:79197200-79213600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:79199000-79213800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:79199600-79218800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:79199800-79229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:79202400-79213400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:79202600-79211800	Weak transcription	Fetal Brain Male	brain
13	chr15:79202800-79213200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:79202800-79213800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:79203600-79231000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr15:79204200-79211800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:79204800-79213600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:79204800-79219600	Strong transcription	Fetal Brain Female	brain
19	chr15:79205000-79219000	Weak transcription	Fetal Kidney	kidney
20	chr15:79205400-79210800	Weak transcription	Fetal Lung	lung
21	chr15:79205400-79227800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:79205800-79210800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr15:79205800-79223600	Weak transcription	Stomach Mucosa	stomach
24	chr15:79206000-79210400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr15:79206000-79211000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:79206200-79210200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:79206200-79211200	Strong transcription	HUVEC	blood vessel
28	chr15:79206400-79210800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:79206400-79211800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:79206600-79210400	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr15:79206600-79213600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:79206800-79210200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr15:79206800-79210200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:79206800-79213600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:79207000-79210200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:79207000-79211600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:79207000-79211600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr15:79207000-79213400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:79207000-79213600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:79207000-79213600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:79207000-79213600	Weak transcription	Gastric	stomach
42	chr15:79207400-79210400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:79207800-79210200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr15:79207800-79213600	Weak transcription	Psoas Muscle	Psoas
45	chr15:79208000-79210200	Genic enhancers	HepG2	liver
46	chr15:79208000-79210200	Weak transcription	HSMMtube	muscle
47	chr15:79208000-79210800	Weak transcription	NH-A	brain
48	chr15:79208000-79213600	Weak transcription	Aorta	Aorta
49	chr15:79208200-79210200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr15:79208200-79210200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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