Variant report

Variant	rs4779660
Chromosome Location	chr15:34524995-34524996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34524299..34528095-chr15:34529028..34532690,4	K562	blood:
2	chr15:34516443..34520692-chr15:34521035..34525736,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128463	Chromatin interaction
ENSG00000140199	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10519916	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11544437	1.00[JPT][hapmap]
rs11638909	0.95[GIH][hapmap]
rs12438953	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs16958873	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958875	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17236770	1.00[GIH][hapmap]
rs7167503	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73386041	0.82[EUR][1000 genomes]
rs74010034	1.00[ASN][1000 genomes]
rs8033087	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34517800-34531200	Weak transcription	Small Intestine	intestine
2	chr15:34518000-34528000	Weak transcription	Aorta	Aorta
3	chr15:34518000-34532800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:34518000-34571800	Weak transcription	Stomach Mucosa	stomach
5	chr15:34518200-34525600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:34518200-34528800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:34518400-34531000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:34518800-34529000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:34518800-34548200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:34519000-34552400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:34519200-34530200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:34519200-34533200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:34519200-34534000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:34519200-34552200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:34519200-34553600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:34519400-34530200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:34519400-34533200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:34519400-34540800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:34519400-34552200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr15:34519400-34552200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:34519600-34526600	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr15:34519600-34531800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:34519600-34533400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:34519600-34533400	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:34519600-34533600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr15:34519600-34533600	Strong transcription	Fetal Muscle Leg	muscle
27	chr15:34519600-34538400	Strong transcription	Fetal Intestine Large	intestine
28	chr15:34519600-34544200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:34519600-34553600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:34519800-34531200	Strong transcription	GM12878-XiMat	blood
31	chr15:34519800-34533000	Strong transcription	Brain Anterior Caudate	brain
32	chr15:34519800-34540000	Strong transcription	Liver	Liver
33	chr15:34519800-34544800	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:34520000-34528000	Weak transcription	Fetal Kidney	kidney
35	chr15:34520000-34529600	Weak transcription	Fetal Heart	heart
36	chr15:34520000-34531400	Strong transcription	Fetal Brain Female	brain
37	chr15:34520200-34530200	Weak transcription	Psoas Muscle	Psoas
38	chr15:34520200-34555600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr15:34520600-34525600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:34520800-34526000	Weak transcription	Ovary	ovary
41	chr15:34520800-34530800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:34521000-34532800	Weak transcription	K562	blood
43	chr15:34521000-34547800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr15:34521200-34525600	Weak transcription	Spleen	Spleen
45	chr15:34521800-34525800	Weak transcription	Esophagus	oesophagus
46	chr15:34521800-34528000	Weak transcription	Gastric	stomach
47	chr15:34521800-34528000	Weak transcription	Pancreas	Pancrea
48	chr15:34521800-34531000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:34522000-34527200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:34522000-34527800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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