Variant report

Variant	rs478971
Chromosome Location	chr9:15285827-15285828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7035671	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761505	chr9:15274373-15319613	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2762797	chr9:15282415-15297028	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892624	chr9:15283761-15415461	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15241200-15286200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:15243000-15293400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr9:15250200-15288200	Weak transcription	Fetal Stomach	stomach
4	chr9:15253800-15286400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:15254000-15293000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:15254200-15293000	Weak transcription	NHEK	skin
7	chr9:15254200-15295600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:15259200-15293400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:15273600-15286000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:15273600-15293400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:15274000-15286000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr9:15274000-15288400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:15274000-15288400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:15277000-15292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:15277000-15293000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:15277600-15288400	Weak transcription	Lung	lung
17	chr9:15277600-15296800	Weak transcription	Gastric	stomach
18	chr9:15278000-15286000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:15278000-15286200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:15278000-15295200	Weak transcription	Pancreas	Pancrea
21	chr9:15278200-15289400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:15278600-15286200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr9:15278600-15291200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:15279600-15287400	Weak transcription	Small Intestine	intestine
25	chr9:15279800-15293200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr9:15280800-15288600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr9:15281600-15289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:15283400-15287200	Weak transcription	HepG2	liver
29	chr9:15283600-15286000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr9:15283600-15286000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr9:15283600-15286000	Weak transcription	Stomach Mucosa	stomach
32	chr9:15283600-15286200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr9:15283600-15293800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr9:15284200-15286000	Weak transcription	Primary T cells from cord blood	blood
35	chr9:15284200-15286000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr9:15284800-15287000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:15285000-15287600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:15285200-15293800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:15285800-15286200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:15285800-15286800	Enhancers	Primary hematopoietic stem cells	blood
41	chr9:15285800-15286800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:15285800-15286800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr9:15285800-15287400	Enhancers	Fetal Intestine Large	intestine
44	chr9:15285800-15287400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links