Variant report

Variant	rs4795082
Chromosome Location	chr17:33873501-33873502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000108733	Chromatin interaction
ENSG00000006125	Chromatin interaction
ENSG00000267035	Chromatin interaction
ENSG00000267359	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11080353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11080354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11080355	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11659054	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12150450	0.94[CEU][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17550268	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35614987	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66878360	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7501448	0.83[CEU][hapmap]
rs7502331	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8065635	0.82[CEU][hapmap]
rs8070030	0.83[CEU][hapmap]
rs8073060	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9894813	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4795082	LOC645744	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33869800-33877200	Weak transcription	Lung	lung
2	chr17:33870400-33881000	Weak transcription	K562	blood
3	chr17:33870400-33888600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:33871600-33873600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:33871600-33873800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:33872800-33875000	Weak transcription	Stomach Mucosa	stomach
7	chr17:33873200-33873600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr17:33873200-33873800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr17:33873200-33874000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr17:33873200-33874000	Enhancers	Primary B cells from cord blood	blood
11	chr17:33873200-33874000	Enhancers	Adipose Nuclei	Adipose
12	chr17:33873200-33874200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr17:33873200-33874200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:33873200-33874200	Enhancers	GM12878-XiMat	blood
15	chr17:33873400-33874000	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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