Variant report

Variant	rs4799563
Chromosome Location	chr18:28701645-28701646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12960042	0.81[ASN][1000 genomes]
rs1437604	0.83[EUR][1000 genomes]
rs1595358	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1626413	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626700	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1658108	0.97[ASN][1000 genomes]
rs1658110	0.97[ASN][1000 genomes]
rs1658111	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1658112	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1658130	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1658135	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17800159	0.93[ASN][1000 genomes]
rs1789036	0.99[ASN][1000 genomes]
rs1789043	0.97[ASN][1000 genomes]
rs1789072	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1790669	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790670	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790671	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790673	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790674	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790675	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1790691	0.99[ASN][1000 genomes]
rs1790706	0.83[EUR][1000 genomes]
rs2243907	0.99[ASN][1000 genomes]
rs2577079	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2577081	1.00[ASN][1000 genomes]
rs4799564	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4799565	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28700400-28703000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links