The 2.0 version of rSNPBase

Variant report

Variant rs4802116
Chromosome Location chr19:41905540-41905541
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41904200-41913400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr19:41904600-41906000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr19:41904600-41924800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr19:41904800-41905800 Enhancers Primary T helper cells fromperipheralblood blood
5 chr19:41904800-41913200 Weak transcription H9 Cell Line embryonic stem cell
6 chr19:41904800-41914800 Weak transcription Placenta Amnion Placenta Amnion
7 chr19:41905000-41905600 Enhancers Fetal Adrenal Gland Adrenal Gland
8 chr19:41905000-41905800 Enhancers Breast Myoepithelial Primary Cells Breast
9 chr19:41905000-41907200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr19:41905000-41907200 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr19:41905000-41907400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr19:41905000-41907400 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr19:41905000-41912800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr19:41905000-41912800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr19:41905000-41915200 Weak transcription Muscle Satellite Cultured Cells --
16 chr19:41905000-41916000 Weak transcription Gastric stomach
17 chr19:41905000-41916400 Weak transcription Brain Germinal Matrix brain
18 chr19:41905000-41916600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr19:41905000-41916600 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr19:41905000-41924800 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr19:41905000-41930800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr19:41905200-41905800 Enhancers Primary T helper cells PMA-I stimulated --
23 chr19:41905200-41905800 Enhancers Liver Liver
24 chr19:41905200-41906000 Enhancers Skeletal Muscle Male skeletal muscle
25 chr19:41905200-41906000 Enhancers Skeletal Muscle Female skeletal muscle
26 chr19:41905200-41906800 Weak transcription Fetal Intestine Small intestine
27 chr19:41905200-41906800 Weak transcription HUVEC blood vessel
28 chr19:41905200-41907000 Weak transcription Fetal Intestine Large intestine
29 chr19:41905200-41907200 Weak transcription Primary B cells from peripheral blood blood
30 chr19:41905200-41907200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
31 chr19:41905200-41907200 Weak transcription Lung lung
32 chr19:41905200-41907200 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr19:41905200-41907400 Weak transcription Primary T cells from cord blood blood
34 chr19:41905200-41907400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr19:41905200-41907400 Weak transcription Brain Inferior Temporal Lobe brain
36 chr19:41905200-41907400 Weak transcription Fetal Brain Female brain
37 chr19:41905200-41907400 Weak transcription Fetal Muscle Trunk muscle
38 chr19:41905200-41907400 Weak transcription Fetal Muscle Leg muscle
39 chr19:41905200-41907400 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr19:41905200-41907400 Weak transcription Spleen Spleen
41 chr19:41905200-41907400 Weak transcription NHLF lung
42 chr19:41905200-41907600 Weak transcription Brain Hippocampus Middle brain
43 chr19:41905200-41907800 Weak transcription Primary B cells from cord blood blood
44 chr19:41905200-41907800 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr19:41905200-41908400 Weak transcription Primary T cells fromperipheralblood blood
46 chr19:41905200-41908400 Weak transcription Right Ventricle heart
47 chr19:41905200-41908800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr19:41905200-41908800 Weak transcription Duodenum Mucosa Duodenum
49 chr19:41905200-41908800 Weak transcription Thymus Thymus
50 chr19:41905200-41909000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015