Variant report
Variant | rs4814437 |
---|---|
Chromosome Location | chr20:16137939-16137940 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs17726942 | 0.80[EUR][1000 genomes] |
rs2327989 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4142099 | 0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4239715 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4239716 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4814439 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4814440 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6034400 | 0.84[EUR][1000 genomes] |
rs6043753 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6075014 | 0.82[EUR][1000 genomes] |
rs6075015 | 0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6075017 | 0.87[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs6075018 | 0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6075019 | 0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6080131 | 0.82[EUR][1000 genomes] |
rs6080134 | 0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6080147 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6080148 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6080150 | 0.84[ASN][1000 genomes] |
rs6080154 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6110922 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1059778 | chr20:15999519-16165895 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | nsv544207 | chr20:15999519-16165895 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv833930 | chr20:16134347-16302763 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:16137400-16138200 | Enhancers | Primary B cells from cord blood | blood |
2 | chr20:16137400-16138600 | Enhancers | Primary B cells from peripheral blood | blood |