Variant report

Variant	rs4815275
Chromosome Location	chr20:24534613-24534614
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1326299	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1409371	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1575873	0.83[ASN][1000 genomes]
rs1980821	0.81[ASN][1000 genomes]
rs1980822	0.81[ASN][1000 genomes]
rs1980823	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2018095	0.86[ASN][1000 genomes]
rs4552249	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4815278	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6036837	0.90[ASN][1000 genomes]
rs6076238	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6083555	0.81[ASN][1000 genomes]
rs6083556	0.81[ASN][1000 genomes]
rs6083558	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6083562	0.88[ASN][1000 genomes]
rs6132750	0.88[ASN][1000 genomes]
rs6138330	0.88[ASN][1000 genomes]
rs6138331	0.86[ASN][1000 genomes]
rs8126241	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
2	chr20:24527400-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr20:24528800-24538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:24528800-24546400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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