Variant report

Variant	rs4826367
Chromosome Location	chrX:55083417-55083418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chrX:55083297-55084663	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:54838735..54840805-chrX:55081585..55084393,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234466	TF binding region
ENSG00000221716	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11091385	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs12012253	0.85[CEU][hapmap]
rs12557008	1.00[CEU][hapmap]
rs1494364	0.81[CEU][hapmap]
rs1494365	0.84[CEU][hapmap]
rs1845442	0.81[CEU][hapmap]
rs1874111	0.81[CEU][hapmap]
rs5913792	0.81[CEU][hapmap]
rs5960060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5960385	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs5960401	0.80[CEU][hapmap]
rs983823	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386096	chrX:55083379-55083718	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55082800-55084600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chrX:55082800-55084600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chrX:55083000-55083800	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chrX:55083000-55083800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chrX:55083000-55084200	Enhancers	Primary T cells fromperipheralblood	blood
6	chrX:55083000-55084200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chrX:55083000-55084200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chrX:55083400-55083600	Flanking Active TSS	Primary T cells from cord blood	blood
9	chrX:55083400-55083600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chrX:55083400-55083600	Flanking Active TSS	HUVEC	blood vessel
11	chrX:55083400-55083800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chrX:55083400-55083800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chrX:55083400-55083800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chrX:55083400-55084000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chrX:55083400-55084000	Enhancers	Fetal Kidney	kidney
16	chrX:55083400-55084200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chrX:55083400-55084200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chrX:55083400-55084200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chrX:55083400-55084200	Enhancers	Fetal Lung	lung
20	chrX:55083400-55084200	Enhancers	Osteobl	bone
21	chrX:55083400-55084400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chrX:55083400-55084600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chrX:55083400-55085800	Enhancers	K562	blood

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