Variant report

Variant	rs4829229
Chromosome Location	chrX:31700512-31700513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1391112	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap]
rs1391113	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.96[TSI][hapmap];0.84[YRI][hapmap]
rs1497438	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs1497444	0.86[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1497447	0.86[CEU][hapmap]
rs1540705	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.80[GIH][hapmap];0.87[JPT][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap]
rs1801188	0.81[CHD][hapmap];0.80[JPT][hapmap]
rs2030002	0.86[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.97[LWK][hapmap];0.85[YRI][hapmap]
rs2047372	0.87[CHB][hapmap];0.94[CHD][hapmap]
rs2173221	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs2270672	0.90[LWK][hapmap]
rs2404957	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.95[YRI][hapmap]
rs4829110	0.87[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.90[TSI][hapmap]
rs4829111	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs4829232	1.00[CEU][hapmap];0.80[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.80[JPT][hapmap]
rs5927027	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs5927028	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs5927036	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs5927788	0.86[CEU][hapmap]
rs5927793	0.81[CHD][hapmap]
rs5927794	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs5927802	0.86[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.87[JPT][hapmap];0.97[LWK][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap]
rs5927810	0.84[CHD][hapmap];0.80[JPT][hapmap]
rs5927813	1.00[CEU][hapmap];0.80[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs5927816	1.00[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap]
rs5971587	0.93[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap]
rs5971588	0.86[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.93[TSI][hapmap]
rs5972436	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs5972437	1.00[CEU][hapmap];0.80[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap]
rs5972438	0.93[CEU][hapmap];0.81[LWK][hapmap];0.86[TSI][hapmap]
rs6527110	0.86[CHB][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv531098	chrX:31462522-31824884	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv481719	chrX:31470100-31807209	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv481814	chrX:31566314-32058570	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv481764	chrX:31587315-31944285	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv481778	chrX:31604303-31983342	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv520230	chrX:31611075-31919659	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv481755	chrX:31616904-31927606	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv481902	chrX:31619444-32462711	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	nsv817363	chrX:31631154-31864893	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv481760	chrX:31637622-31934461	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv481827	chrX:31645914-32083900	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv481716	chrX:31649484-31789177	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv531768	chrX:31650185-31972259	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
15	nsv481844	chrX:31651170-32212746	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
16	nsv481763	chrX:31653788-31943470	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
17	nsv817576	chrX:31658889-31990023	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv481965	chrX:31663747-31820676	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv994953	chrX:31664103-31792102	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv481834	chrX:31665920-32119555	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	nsv481710	chrX:31666807-31707680	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv481897	chrX:31667681-31845935	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv481837	chrX:31671312-32142410	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
24	nsv481830	chrX:31675390-32090323	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	nsv934122	chrX:31676055-32080062	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	nsv481835	chrX:31679965-32135027	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
27	nsv481724	chrX:31680008-31837351	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	nsv531771	chrX:31683623-32129067	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
29	nsv481809	chrX:31685543-32024675	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
30	nsv481842	chrX:31687471-32169279	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
31	nsv481711	chrX:31688716-31750612	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv481791	chrX:31689946-32002350	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
33	nsv481811	chrX:31691890-32046011	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
34	nsv481718	chrX:31697177-31795226	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv481725	chrX:31699986-31840438	Enhancers Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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