Variant report

Variant	rs4833611
Chromosome Location	chr4:120147460-120147461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119960403..119963318-chr4:120145478..120148032,2	MCF-7	breast:
2	chr4:120132915..120135599-chr4:120147447..120150353,2	MCF-7	breast:
3	chr4:120146321..120148170-chr4:120150599..120152803,2	K562	blood:

Variant related genes	Relation type
ENSG00000178636	Chromatin interaction
ENSG00000145390	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10033031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1134065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11943184	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11946597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12643221	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12643853	0.82[ASN][1000 genomes]
rs12644283	0.90[CEU][hapmap]
rs12648052	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2102541	0.81[CEU][hapmap]
rs35886000	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4621411	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4834762	1.00[CEU][hapmap]
rs56090560	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61015834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62326359	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62328360	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62328375	0.81[ASN][1000 genomes]
rs6534132	0.82[ASN][1000 genomes]
rs7654590	0.80[ASN][1000 genomes]
rs7668372	0.82[ASN][1000 genomes]
rs7668423	0.82[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	esv2763386	chr4:120143861-120186968	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv966480	chr4:120144708-120160847	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4833611	FABP2	cis	Whole Blood	GTEx

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120134800-120170000	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:120135000-120154800	Weak transcription	Primary B cells from cord blood	blood
3	chr4:120135000-120170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:120135000-120195800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:120135200-120155000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:120135200-120155000	Weak transcription	Small Intestine	intestine
7	chr4:120135200-120163600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:120135200-120176200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:120135200-120176200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:120135400-120159000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:120135400-120194600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:120135600-120155000	Weak transcription	K562	blood
13	chr4:120135600-120173800	Weak transcription	Brain Anterior Caudate	brain
14	chr4:120136200-120148000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:120136200-120154400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr4:120136200-120219200	Weak transcription	Brain Angular Gyrus	brain
17	chr4:120136400-120151600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:120136400-120155000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:120136400-120155000	Weak transcription	Stomach Mucosa	stomach
20	chr4:120136400-120156400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:120137000-120151000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:120137400-120155000	Weak transcription	Right Atrium	heart
23	chr4:120137600-120154600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr4:120138600-120148000	Weak transcription	Pancreas	Pancrea
25	chr4:120138800-120155000	Weak transcription	Fetal Thymus	thymus
26	chr4:120139000-120148400	Weak transcription	Gastric	stomach
27	chr4:120139400-120149200	Weak transcription	Fetal Heart	heart
28	chr4:120139400-120151400	Weak transcription	HepG2	liver
29	chr4:120139400-120151600	Weak transcription	Psoas Muscle	Psoas
30	chr4:120139400-120165800	Weak transcription	Fetal Kidney	kidney
31	chr4:120139600-120151200	Weak transcription	Primary T cells from cord blood	blood
32	chr4:120139600-120151600	Weak transcription	Aorta	Aorta
33	chr4:120139600-120153600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:120140000-120155000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr4:120140200-120154800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:120140200-120154800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr4:120140600-120151400	Weak transcription	Left Ventricle	heart
38	chr4:120140600-120151600	Weak transcription	Right Ventricle	heart
39	chr4:120140600-120167400	Weak transcription	Colonic Mucosa	Colon
40	chr4:120140800-120152800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr4:120140800-120154600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr4:120140800-120154800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:120140800-120158800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr4:120141000-120149200	Weak transcription	NHLF	lung
45	chr4:120141000-120151200	Weak transcription	Liver	Liver
46	chr4:120141000-120153800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:120141000-120154600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:120141000-120154600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr4:120141000-120154800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr4:120141000-120158800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links