Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1005771	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1346599	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1366692	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1366694	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1429101	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1429127	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429138	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1429140	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1560228	0.80[AMR][1000 genomes]
rs1981987	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2115561	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2714904	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4835079	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835396	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6816629	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817192	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6823869	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7694172	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs934142	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148271000-148282200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:148274800-148277600	Enhancers	Fetal Kidney	kidney
3	chr4:148274800-148277600	Enhancers	Fetal Lung	lung
4	chr4:148275000-148277400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:148275800-148278000	Enhancers	Osteobl	bone
6	chr4:148276200-148277200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:148276200-148277400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:148276200-148277800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:148276200-148278000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:148276200-148278000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:148276200-148278000	Enhancers	NH-A	brain
12	chr4:148276200-148278000	Enhancers	NHDF-Ad	bronchial
13	chr4:148276200-148278200	Enhancers	HSMM	muscle
14	chr4:148276400-148277400	Enhancers	Ovary	ovary
15	chr4:148276400-148277600	Enhancers	NHLF	lung
16	chr4:148276600-148281000	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:148276800-148277400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:148277000-148277400	Weak transcription	Fetal Stomach	stomach
19	chr4:148277000-148277400	Enhancers	HUVEC	blood vessel
20	chr4:148277000-148277600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:148277000-148277800	Enhancers	HSMMtube	muscle

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