Variant report

Variant	rs4835079
Chromosome Location	chr4:148280685-148280686
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1005771	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1346599	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1366692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366694	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1429101	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1429127	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1429138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1429140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560228	0.87[AMR][1000 genomes]
rs1981987	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2115561	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2714904	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4835078	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835396	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6816629	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6817192	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6823869	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7694172	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs934142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148271000-148282200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:148276600-148281000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:148277400-148281000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:148277400-148281000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:148277400-148281000	Weak transcription	Ovary	ovary
6	chr4:148277400-148281200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:148277400-148282400	Weak transcription	HUVEC	blood vessel
8	chr4:148277600-148280800	Weak transcription	Fetal Stomach	stomach
9	chr4:148277600-148281000	Weak transcription	NHLF	lung
10	chr4:148277600-148281200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:148277600-148281400	Weak transcription	Fetal Lung	lung
12	chr4:148277800-148280800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:148277800-148281000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:148277800-148281000	Weak transcription	HSMMtube	muscle
15	chr4:148277800-148281600	Weak transcription	Hela-S3	cervix
16	chr4:148278000-148280800	Weak transcription	NH-A	brain
17	chr4:148278000-148280800	Weak transcription	Osteobl	bone
18	chr4:148278000-148281000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:148278000-148281000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:148278000-148281000	Weak transcription	NHDF-Ad	bronchial
21	chr4:148278200-148281000	Weak transcription	HSMM	muscle
22	chr4:148280000-148285800	Enhancers	Fetal Intestine Small	intestine
23	chr4:148280000-148287000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:148280200-148281200	Weak transcription	Stomach Mucosa	stomach
25	chr4:148280600-148282200	Weak transcription	Rectal Mucosa Donor 31	rectum

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