Variant report

Variant	rs4838511
Chromosome Location	chr10:50613506-50613507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2228525	0.85[AMR][1000 genomes]
rs4253010	0.85[AMR][1000 genomes]
rs4253029	0.85[AMR][1000 genomes]
rs4253050	0.85[AMR][1000 genomes]
rs4253061	0.85[AMR][1000 genomes]
rs4253069	0.85[AMR][1000 genomes]
rs4253109	0.85[AMR][1000 genomes]
rs4253112	0.85[AMR][1000 genomes]
rs4253133	0.85[AMR][1000 genomes]
rs4253151	0.85[AMR][1000 genomes]
rs4253172	1.00[EUR][1000 genomes]
rs4253177	1.00[EUR][1000 genomes]
rs4253194	1.00[EUR][1000 genomes]
rs4253225	0.85[AMR][1000 genomes]
rs4838531	0.85[AMR][1000 genomes]
rs7904886	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50611400-50614200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:50612600-50627200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:50613000-50613800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr10:50613400-50613600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:50613400-50613600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr10:50613400-50613600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
7	chr10:50613400-50615400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:50613400-50615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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