Variant report

Variant	rs4840134
Chromosome Location	chr6:100951699-100951700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100950945..100952516-chr6:100960244..100962727,2	K562	blood:
2	chr6:100950233..100952061-chr6:100952645..100955595,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM13-10	chr6:100951626-100955498	NONHSAT114157

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10457800	0.84[EUR][1000 genomes]
rs11155472	0.82[EUR][1000 genomes]
rs11155477	0.84[EUR][1000 genomes]
rs12208241	0.84[EUR][1000 genomes]
rs12212939	0.92[EUR][1000 genomes]
rs12664707	0.91[EUR][1000 genomes]
rs13201976	0.84[EUR][1000 genomes]
rs1894561	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007134	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071826	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2157342	0.92[EUR][1000 genomes]
rs2213594	0.84[EUR][1000 genomes]
rs2213595	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2397974	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs241819	0.88[EUR][1000 genomes]
rs4840132	0.89[EUR][1000 genomes]
rs4840133	0.80[EUR][1000 genomes]
rs6901854	0.92[EUR][1000 genomes]
rs6903206	0.84[EUR][1000 genomes]
rs6910391	0.82[EUR][1000 genomes]
rs6929748	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939998	0.84[EUR][1000 genomes]
rs7748269	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751185	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751526	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773043	0.92[EUR][1000 genomes]
rs7773661	0.91[EUR][1000 genomes]
rs9322076	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373504	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386154	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100949800-100966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:100950000-100952200	Enhancers	Liver	Liver
3	chr6:100950200-100959000	Weak transcription	Pancreas	Pancrea
4	chr6:100950400-100954000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:100950400-100955000	Enhancers	Osteobl	bone
6	chr6:100950400-100959200	Weak transcription	Gastric	stomach
7	chr6:100950600-100952400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:100950600-100952600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:100950800-100952600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:100951200-100952200	Weak transcription	NH-A	brain
11	chr6:100951200-100953200	Enhancers	HSMM	muscle
12	chr6:100951200-100959200	Weak transcription	Left Ventricle	heart
13	chr6:100951400-100953600	Enhancers	NHDF-Ad	bronchial
14	chr6:100951400-100959400	Weak transcription	HepG2	liver
15	chr6:100951400-100960000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:100951600-100952600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:100951600-100953400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:100951600-100957000	Weak transcription	Small Intestine	intestine
19	chr6:100951600-100969800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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