Variant report

Variant	rs4840200
Chromosome Location	chr6:102327303-102327304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11156157	1.00[YRI][hapmap]
rs11962789	1.00[YRI][hapmap]
rs1555775	1.00[YRI][hapmap]
rs1965603	1.00[YRI][hapmap]
rs2518267	1.00[YRI][hapmap]
rs2518268	1.00[YRI][hapmap]
rs2764224	1.00[YRI][hapmap]
rs2764225	0.85[MKK][hapmap];1.00[YRI][hapmap]
rs2791817	1.00[YRI][hapmap]
rs2791821	1.00[YRI][hapmap]
rs2852573	1.00[YRI][hapmap]
rs4120910	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap]
rs4501440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4839803	1.00[YRI][hapmap]
rs4839804	1.00[YRI][hapmap]
rs4840194	1.00[TSI][hapmap]
rs4840197	1.00[YRI][hapmap]
rs4840198	1.00[YRI][hapmap]
rs4840199	1.00[YRI][hapmap]
rs6570996	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322613	1.00[YRI][hapmap]
rs9377308	1.00[YRI][hapmap]
rs9377314	1.00[YRI][hapmap]
rs9377318	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs9386294	1.00[YRI][hapmap]
rs9390788	1.00[YRI][hapmap]
rs9404145	1.00[YRI][hapmap]
rs9404152	1.00[YRI][hapmap]
rs9404153	0.85[MKK][hapmap];1.00[YRI][hapmap]
rs9404154	1.00[TSI][hapmap]
rs9485549	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap]
rs9485553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9498713	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv463994	chr6:102303080-102346746	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv604318	chr6:102303080-102346746	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604319	chr6:102307069-102355867	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604320	chr6:102310726-102350747	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102327000-102327400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:102327000-102331600	Weak transcription	Fetal Heart	heart
3	chr6:102327200-102327600	Enhancers	GM12878-XiMat	blood
4	chr6:102327200-102331400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links