Variant report

Variant	rs4840541
Chromosome Location	chr8:10936929-10936930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11785392	0.80[EUR][1000 genomes]
rs12156117	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13248264	1.00[ASN][1000 genomes]
rs13248300	0.80[EUR][1000 genomes]
rs13265533	0.81[EUR][1000 genomes]
rs17152841	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17779791	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409692	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409693	1.00[ASN][1000 genomes]
rs2409695	0.82[EUR][1000 genomes]
rs4841491	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67841554	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9657544	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9657545	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4840541	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10925000-10941800	Weak transcription	Right Atrium	heart
2	chr8:10925600-10944400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:10932000-10939800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:10935200-10943800	Weak transcription	Brain Anterior Caudate	brain
5	chr8:10935600-10939800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:10936200-10937800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:10936600-10937000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:10936600-10940600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:10936800-10937800	Weak transcription	HMEC	breast
10	chr8:10936800-10938000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:10936800-10938000	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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