Variant report

Variant	rs4841281
Chromosome Location	chr8:9963646-9963647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9963502..9966052-chr8:9972558..9974638,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10087802	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs10088663	0.89[ASN][1000 genomes]
rs10088890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10090114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10100022	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1023961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11984513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11990555	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12678797	0.89[JPT][hapmap]
rs12678800	0.89[JPT][hapmap]
rs13249486	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13254175	0.89[JPT][hapmap]
rs13282106	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1351876	0.89[JPT][hapmap]
rs1484639	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1484640	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1484642	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1484644	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1521190	0.85[ASN][1000 genomes]
rs1531918	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1531919	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17151244	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs17689563	0.94[ASN][1000 genomes]
rs17689674	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17738724	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs17739113	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs17739179	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs2046399	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2046400	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs2062331	0.89[JPT][hapmap]
rs2062332	0.88[JPT][hapmap]
rs2062333	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2220149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2220150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2628140	1.00[CHB][hapmap]
rs2661755	0.85[ASN][1000 genomes]
rs472514	0.86[YRI][hapmap]
rs4841282	0.89[JPT][hapmap]
rs4841284	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4841285	0.89[ASN][1000 genomes]
rs569446	0.85[ASN][1000 genomes]
rs57726127	0.94[ASN][1000 genomes]
rs57980126	0.85[ASN][1000 genomes]
rs58133870	0.85[ASN][1000 genomes]
rs58437548	0.85[ASN][1000 genomes]
rs658385	0.80[ASN][1000 genomes]
rs6601414	0.89[JPT][hapmap]
rs6601415	0.89[JPT][hapmap]
rs685353	0.80[ASN][1000 genomes]
rs6983332	0.89[JPT][hapmap]
rs6986885	0.88[JPT][hapmap]
rs6986911	0.89[JPT][hapmap]
rs6995837	0.89[JPT][hapmap]
rs6995859	0.89[JPT][hapmap]
rs7005350	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs728878	1.00[CHB][hapmap];0.86[YRI][hapmap]
rs7812741	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs7823314	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7823714	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7832670	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7833387	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7833895	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[ASN][1000 genomes]
rs7843443	0.84[JPT][hapmap]
rs814405	1.00[CHB][hapmap]
rs923046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.89[ASN][1000 genomes]
rs9329216	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs963592	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9957000-9965400	Weak transcription	Brain Angular Gyrus	brain
2	chr8:9958600-9965200	Weak transcription	Fetal Heart	heart
3	chr8:9959800-9974000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:9961200-9967400	Weak transcription	Primary T cells from cord blood	blood
5	chr8:9961400-9970400	Weak transcription	Pancreas	Pancrea
6	chr8:9962000-9969000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr8:9962400-9963800	Weak transcription	Fetal Brain Male	brain
8	chr8:9962400-9964000	Enhancers	Fetal Brain Female	brain
9	chr8:9962400-9965800	Weak transcription	Psoas Muscle	Psoas
10	chr8:9962600-9966800	Weak transcription	Spleen	Spleen
11	chr8:9962800-9963800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:9963000-9963800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:9963000-9963800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:9963000-9963800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:9963000-9964200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:9963000-9964400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:9963000-9970200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:9963200-9963800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr8:9963200-9963800	Enhancers	Gastric	stomach
20	chr8:9963200-9964000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:9963200-9966200	Weak transcription	Brain Germinal Matrix	brain
22	chr8:9963200-9970400	Weak transcription	Aorta	Aorta
23	chr8:9963400-9963800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr8:9963600-9964000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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