Variant report

Variant	rs4841293
Chromosome Location	chr8:10102863-10102864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11781781	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11784866	0.90[EUR][1000 genomes]
rs12543766	0.87[ASN][1000 genomes]
rs13250485	0.83[ASN][1000 genomes]
rs13252180	0.86[ASN][1000 genomes]
rs13279294	0.82[ASN][1000 genomes]
rs35474349	0.83[ASN][1000 genomes]
rs4295669	0.88[ASN][1000 genomes]
rs4336616	0.86[ASN][1000 genomes]
rs4404920	0.82[ASN][1000 genomes]
rs4563888	0.81[ASN][1000 genomes]
rs4840468	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58868895	0.84[ASN][1000 genomes]
rs6601422	0.85[ASN][1000 genomes]
rs6985068	0.82[ASN][1000 genomes]
rs6988744	0.82[ASN][1000 genomes]
rs7008799	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv890346	chr8:10075373-10103435	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028650	chr8:10101815-10178537	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10060200-10103000	Weak transcription	Gastric	stomach
2	chr8:10078800-10103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10095400-10111600	Weak transcription	Primary T cells from cord blood	blood
4	chr8:10095600-10103000	Weak transcription	Pancreas	Pancrea
5	chr8:10096000-10128000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:10096200-10107200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr8:10097600-10103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:10099000-10103000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:10099200-10103000	Weak transcription	Spleen	Spleen
10	chr8:10100600-10103000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:10102200-10103000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:10102400-10103200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:10102400-10105000	Weak transcription	Fetal Brain Male	brain
14	chr8:10102600-10103000	Weak transcription	Left Ventricle	heart
15	chr8:10102600-10103000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:10102600-10103200	ZNF genes & repeats	Fetal Brain Female	brain
17	chr8:10102600-10103400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr8:10102800-10103000	Weak transcription	Adipose Nuclei	Adipose
19	chr8:10102800-10103200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr8:10102800-10103400	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr8:10102800-10103600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr8:10102800-10103600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:10102800-10103600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:10102800-10103800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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