Variant report

Variant	rs4841474
Chromosome Location	chr8:10855375-10855376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10855156..10855675-chr8:14126636..14127136,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10091913	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10107384	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10216472	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10217059	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11250108	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11779199	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11784312	0.92[EUR][1000 genomes]
rs11988372	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11995682	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12216757	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12216784	0.94[EUR][1000 genomes]
rs12216875	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4074822	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4320511	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4507728	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841469	0.82[EUR][1000 genomes]
rs4841471	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4841472	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4841475	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841476	0.94[EUR][1000 genomes]
rs4841477	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841478	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4841479	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56052312	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56278516	0.81[EUR][1000 genomes]
rs56319439	0.81[EUR][1000 genomes]
rs61427182	0.94[EUR][1000 genomes]
rs6601546	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990395	0.93[EUR][1000 genomes]
rs6995129	0.90[ASN][1000 genomes]
rs7001599	0.89[EUR][1000 genomes]
rs7016361	0.94[EUR][1000 genomes]
rs73196884	0.93[EUR][1000 genomes]
rs73196885	0.93[EUR][1000 genomes]
rs73196888	0.90[EUR][1000 genomes]
rs7821225	0.90[ASN][1000 genomes]
rs7824797	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825690	0.94[ASN][1000 genomes]
rs7826561	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833832	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7836687	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7836720	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7837828	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7838833	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9329232	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9657542	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10851000-10855600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:10854200-10856400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10854800-10856200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:10854800-10856400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr8:10854800-10856400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:10854800-10857200	Enhancers	Fetal Heart	heart
7	chr8:10855000-10855600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:10855000-10855600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:10855000-10855800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:10855000-10855800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr8:10855000-10856400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:10855200-10855600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
13	chr8:10855200-10855600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:10855200-10855600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr8:10855200-10855800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr8:10855200-10855800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr8:10855200-10856200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:10855200-10856600	Enhancers	Left Ventricle	heart
19	chr8:10855200-10856600	Enhancers	HSMMtube	muscle

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