Variant report

Variant	rs4841476
Chromosome Location	chr8:10865714-10865715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10864237..10865901-chr8:10868526..10870693,2	MCF-7	breast:
2	chr8:10865711..10867297-chr8:10870824..10872479,2	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10091913	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10100449	1.00[CHB][hapmap]
rs10107384	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10108304	1.00[CHB][hapmap]
rs10110123	1.00[CHB][hapmap]
rs10111751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10216472	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs10217059	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10282848	1.00[CHB][hapmap]
rs11250103	0.91[CEU][hapmap];0.82[TSI][hapmap]
rs11250108	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11250110	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11250111	1.00[CHB][hapmap]
rs11250120	1.00[CHB][hapmap]
rs11779199	1.00[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11784312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11986748	1.00[CHB][hapmap]
rs11988372	1.00[CEU][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs11991121	1.00[CHB][hapmap]
rs11995682	0.97[EUR][1000 genomes]
rs11996027	1.00[CHB][hapmap]
rs11998417	1.00[CHB][hapmap]
rs12216757	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12216784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12216875	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17152862	1.00[CHB][hapmap]
rs17152881	1.00[CHB][hapmap]
rs17152921	1.00[CHB][hapmap]
rs17152930	1.00[CHB][hapmap]
rs17152938	1.00[CHB][hapmap]
rs17152978	1.00[CHB][hapmap]
rs17722940	1.00[CHB][hapmap]
rs17725809	1.00[CHB][hapmap]
rs17726352	1.00[CHB][hapmap]
rs17779093	1.00[CHB][hapmap]
rs2898254	1.00[CHB][hapmap]
rs2898258	1.00[CHB][hapmap]
rs35083028	1.00[ASN][1000 genomes]
rs3923921	0.87[ASN][1000 genomes]
rs4074356	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4074822	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4076425	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4270924	1.00[CHB][hapmap]
rs4320511	1.00[CEU][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs4349949	1.00[CHB][hapmap]
rs4370496	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4386942	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4507728	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs4840530	0.91[CEU][hapmap];0.82[TSI][hapmap]
rs4840531	0.87[ASN][1000 genomes]
rs4841469	0.82[EUR][1000 genomes]
rs4841471	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs4841472	0.96[EUR][1000 genomes]
rs4841473	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4841474	0.94[EUR][1000 genomes]
rs4841475	0.97[EUR][1000 genomes]
rs4841477	0.87[EUR][1000 genomes]
rs4841478	0.88[EUR][1000 genomes]
rs4841479	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs56011306	1.00[ASN][1000 genomes]
rs56052312	0.89[EUR][1000 genomes]
rs56112120	0.87[ASN][1000 genomes]
rs56278516	0.83[EUR][1000 genomes]
rs56319439	0.83[EUR][1000 genomes]
rs59446076	0.87[ASN][1000 genomes]
rs61427182	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601546	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs6601550	1.00[CHB][hapmap]
rs67113145	1.00[ASN][1000 genomes]
rs6983680	1.00[CHB][hapmap]
rs6990395	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994928	1.00[CHB][hapmap]
rs6999969	1.00[CHB][hapmap]
rs7000298	1.00[CHB][hapmap]
rs7000431	1.00[CHB][hapmap]
rs7001599	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7010099	1.00[CHB][hapmap]
rs7010126	1.00[CHB][hapmap]
rs7014291	1.00[CHB][hapmap]
rs7016361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73196884	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73196885	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73196888	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7350066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.87[ASN][1000 genomes]
rs7350072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7350074	1.00[ASN][1000 genomes]
rs7813323	0.87[ASN][1000 genomes]
rs7820231	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7820777	1.00[CHB][hapmap]
rs7822400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7824797	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7826561	0.94[EUR][1000 genomes]
rs7833832	0.97[EUR][1000 genomes]
rs7836687	0.94[EUR][1000 genomes]
rs7836720	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs7837828	1.00[CEU][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs7838051	1.00[CHB][hapmap]
rs7838833	1.00[CEU][hapmap];0.89[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs7840980	1.00[CHB][hapmap]
rs7841435	1.00[CHB][hapmap]
rs7842214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.87[ASN][1000 genomes]
rs7845088	1.00[CHB][hapmap]
rs7846545	1.00[JPT][hapmap]
rs9329232	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs9329237	1.00[CHB][hapmap]
rs9657542	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4841476	C8orf79	cis	cerebellum	SCAN
rs4841476	INPPL1	trans	cerebellum	SCAN
rs4841476	FLJ10661	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10859400-10872200	Weak transcription	Brain Angular Gyrus	brain
2	chr8:10864800-10865800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr8:10864800-10865800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:10864800-10865800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:10865000-10865800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:10865000-10866400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:10865200-10866000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:10865200-10870400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:10865400-10870400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:10865400-10870600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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