Variant report

Variant	rs4841479
Chromosome Location	chr8:10873609-10873610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10867872..10870530-chr8:10872109..10874885,2	K562	blood:
2	chr8:10861649..10864572-chr8:10871901..10875246,3	K562	blood:
3	chr8:10869029..10871589-chr8:10873580..10875933,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10091913	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10107384	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10216472	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217059	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11250103	0.95[CEU][hapmap]
rs11250108	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11779199	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11784312	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11988372	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11995682	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12216757	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12216784	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12216875	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4074822	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4320511	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507728	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4840530	0.95[CEU][hapmap]
rs4841471	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841472	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4841474	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4841475	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4841476	0.93[EUR][1000 genomes]
rs4841477	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4841478	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56052312	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61427182	0.93[EUR][1000 genomes]
rs6601546	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6990395	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6995129	0.93[ASN][1000 genomes]
rs7001599	0.87[EUR][1000 genomes]
rs7016361	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73196884	0.93[EUR][1000 genomes]
rs73196885	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73196888	0.93[EUR][1000 genomes]
rs7821225	0.93[ASN][1000 genomes]
rs7824797	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7825690	0.84[ASN][1000 genomes]
rs7826561	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7833832	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7836687	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7836720	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837828	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7838833	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9329232	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9657542	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10871400-10874200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:10871400-10874400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr8:10871800-10874400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr8:10872200-10874200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr8:10872400-10874200	Active TSS	Spleen	Spleen
6	chr8:10872400-10874400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:10872400-10874400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:10872400-10874400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr8:10872400-10874400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:10872400-10874400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:10872400-10874400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr8:10872400-10874400	Active TSS	Colon Smooth Muscle	Colon
13	chr8:10872400-10874400	Active TSS	Rectal Smooth Muscle	rectum
14	chr8:10872400-10874600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:10872400-10874600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:10872400-10874600	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr8:10872400-10874600	Active TSS	Brain Angular Gyrus	brain
18	chr8:10872400-10874600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr8:10872400-10874600	Bivalent Enhancer	Fetal Brain Male	brain
20	chr8:10872400-10874600	Active TSS	HSMMtube	muscle
21	chr8:10872600-10873800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
22	chr8:10872600-10873800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
23	chr8:10872600-10874000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:10872600-10874000	Flanking Active TSS	HMEC	breast
25	chr8:10872600-10874200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:10872600-10874200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr8:10872600-10874200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
28	chr8:10872600-10874200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
29	chr8:10872600-10874400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr8:10872600-10874400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:10872600-10874400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:10872600-10874400	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr8:10872600-10874400	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr8:10872600-10874400	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr8:10872600-10874400	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr8:10872600-10874400	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr8:10872600-10874600	Active TSS	H1 Cell Line	embryonic stem cell
38	chr8:10872600-10874600	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr8:10872600-10874600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr8:10872600-10874600	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr8:10872600-10874600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:10872600-10874600	Active TSS	HSMM	muscle
43	chr8:10872800-10873800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
44	chr8:10872800-10873800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr8:10872800-10874000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
46	chr8:10872800-10874200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:10872800-10874200	Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr8:10872800-10874200	Active TSS	Muscle Satellite Cultured Cells	--
49	chr8:10872800-10874200	Active TSS	Brain Anterior Caudate	brain
50	chr8:10872800-10874400	Active TSS	Primary T cells from cord blood	blood

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