Variant report

Variant	rs4842558
Chromosome Location	chr12:86581118-86581119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10506927	0.81[CEU][hapmap]
rs10506928	0.91[CEU][hapmap]
rs10506931	1.00[CEU][hapmap]
rs10506934	0.84[CEU][hapmap]
rs10779233	0.81[CEU][hapmap]
rs10863163	0.84[CEU][hapmap]
rs11830208	0.81[CEU][hapmap]
rs12298174	0.81[CEU][hapmap]
rs12305255	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12306726	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12307279	0.89[CEU][hapmap]
rs12308575	0.89[CEU][hapmap]
rs12313444	0.81[CEU][hapmap]
rs12315617	0.84[CEU][hapmap]
rs12316480	0.84[CEU][hapmap]
rs12321159	0.81[CEU][hapmap]
rs1389296	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1552840	1.00[CEU][hapmap]
rs17284129	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17284484	0.91[CEU][hapmap]
rs17284624	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17284820	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs17285589	0.91[CEU][hapmap]
rs17288800	0.91[CEU][hapmap]
rs17289052	0.84[CEU][hapmap]
rs17289087	0.81[CEU][hapmap]
rs17289115	0.81[CEU][hapmap]
rs17289150	0.81[CEU][hapmap]
rs17289178	0.84[CEU][hapmap]
rs17289646	0.81[CEU][hapmap]
rs17357025	0.91[CEU][hapmap]
rs17357233	1.00[CEU][hapmap]
rs17357259	1.00[CEU][hapmap]
rs17357469	1.00[CEU][hapmap]
rs17359446	0.83[CEU][hapmap];0.83[AMR][1000 genomes]
rs17367374	0.84[CEU][hapmap]
rs17367869	0.84[CEU][hapmap]
rs17367946	0.81[CEU][hapmap]
rs4586245	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4842454	1.00[CEU][hapmap]
rs4842468	1.00[CEU][hapmap]
rs4842487	0.88[CEU][hapmap]
rs4842541	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs4842557	0.91[CEU][hapmap]
rs4842640	0.84[CEU][hapmap]
rs55832610	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55886852	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55956857	0.83[AMR][1000 genomes]
rs55998036	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56154427	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57624840	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58024273	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59623111	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61931157	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61932264	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61932265	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61932266	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61932268	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61932269	0.81[EUR][1000 genomes]
rs61932270	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61932271	0.82[EUR][1000 genomes]
rs61932272	0.82[EUR][1000 genomes]
rs61932274	0.82[EUR][1000 genomes]
rs61932275	0.82[EUR][1000 genomes]
rs61948967	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61948994	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61949011	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61949013	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61949036	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61949037	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61949038	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61949039	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61949041	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61949045	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61949047	0.80[AMR][1000 genomes]
rs61949048	0.88[AMR][1000 genomes]
rs61949049	0.88[AMR][1000 genomes]
rs61950663	0.88[AMR][1000 genomes]
rs61950665	0.88[AMR][1000 genomes]
rs61950667	0.83[AMR][1000 genomes]
rs61950671	0.83[AMR][1000 genomes]
rs61950674	0.83[AMR][1000 genomes]
rs61950706	0.80[AMR][1000 genomes]
rs7136697	0.83[CEU][hapmap]
rs7486522	0.84[CEU][hapmap]
rs7487426	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs767898	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3442004	chr12:86514695-86599965	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv800	chr12:86572379-86617887	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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