Variant report

Variant	rs4845012
Chromosome Location	chr1:210570747-210570748
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210544698..210555948-chr1:210566953..210584306,65	MCF-7	breast:
2	chr1:210566042..210569012-chr1:210569613..210571239,2	MCF-7	breast:
3	chr1:210544801..210552702-chr1:210569747..210575327,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1033492	0.85[EUR][1000 genomes]
rs11119483	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070523	0.85[EUR][1000 genomes]
rs12082200	0.96[ASN][1000 genomes]
rs12085633	0.85[EUR][1000 genomes]
rs12143445	0.81[ASN][1000 genomes]
rs12411194	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17016068	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073038	0.86[AMR][1000 genomes]
rs3753229	0.84[AMR][1000 genomes]
rs4845007	0.81[ASN][1000 genomes]
rs4845008	0.81[ASN][1000 genomes]
rs4845009	0.81[ASN][1000 genomes]
rs56381238	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72745442	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72745456	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210529600-210586000	Weak transcription	Pancreas	Pancrea
2	chr1:210551400-210586000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:210559000-210584400	Weak transcription	Fetal Stomach	stomach
4	chr1:210566800-210586200	Weak transcription	Lung	lung
5	chr1:210567400-210617200	Weak transcription	Left Ventricle	heart
6	chr1:210568000-210571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:210568000-210571000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:210568200-210571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:210568200-210571000	Weak transcription	NHLF	lung
10	chr1:210568200-210572600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:210568200-210573800	Weak transcription	Aorta	Aorta
12	chr1:210568800-210571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:210568800-210573800	Weak transcription	Osteobl	bone
14	chr1:210569200-210573600	Weak transcription	HepG2	liver
15	chr1:210569400-210573600	Weak transcription	Right Ventricle	heart
16	chr1:210570200-210571400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:210570200-210571400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:210570200-210573400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:210570200-210594000	Weak transcription	Fetal Lung	lung
20	chr1:210570400-210571000	Weak transcription	HSMMtube	muscle
21	chr1:210570400-210571400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:210570400-210574400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:210570600-210571200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:210570600-210571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:210570600-210571200	Enhancers	GM12878-XiMat	blood
26	chr1:210570600-210571800	Enhancers	HSMM	muscle

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