Variant report

Variant	rs4846326
Chromosome Location	chr1:220726288-220726289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10495149	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs10746403	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap]
rs10779412	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs10779414	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10863557	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11118564	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11118565	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11118566	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118567	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118573	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118576	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118579	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118584	0.82[AMR][1000 genomes]
rs11588721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12046244	0.82[ASW][hapmap]
rs12047297	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12408540	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12735691	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12737023	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1933001	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1933007	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2095669	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2152836	1.00[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2244448	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2378400	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes]
rs2589581	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2589586	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2589589	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2786598	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2786606	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2786610	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2786617	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2889895	0.94[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap]
rs35287074	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3753873	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3753874	0.91[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3767319	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap]
rs3767320	0.94[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3767321	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap]
rs3767323	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.91[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap]
rs3820347	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs3899315	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4120669	0.81[CHB][hapmap]
rs4338357	0.83[AMR][1000 genomes]
rs4846650	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4846653	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4846655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6541154	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6675368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6695583	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.80[LWK][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap]
rs7556280	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9430949	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220718600-220731200	Weak transcription	Esophagus	oesophagus
3	chr1:220718600-220738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:220718600-220739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:220722600-220738800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:220723200-220738600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:220724200-220726800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:220724200-220727800	Enhancers	Fetal Heart	heart
9	chr1:220724400-220727400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:220724400-220727400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
12	chr1:220724600-220726600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:220724600-220726800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:220724600-220729000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:220724600-220729200	Weak transcription	Adipose Nuclei	Adipose
16	chr1:220724600-220737600	Weak transcription	Fetal Brain Female	brain
17	chr1:220724600-220741600	Weak transcription	Aorta	Aorta
18	chr1:220724800-220728800	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:220724800-220738800	Weak transcription	Right Atrium	heart
20	chr1:220725200-220726800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:220725200-220728000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:220726000-220732600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr1:220726200-220726400	Enhancers	Brain Anterior Caudate	brain
24	chr1:220726200-220726400	Enhancers	Right Ventricle	heart
25	chr1:220726200-220726600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:220726200-220726800	Weak transcription	Brain Germinal Matrix	brain
27	chr1:220726200-220726800	Enhancers	HMEC	breast
28	chr1:220726200-220727200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:220726200-220727400	Enhancers	NHEK	skin
30	chr1:220726200-220728000	Enhancers	Left Ventricle	heart

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