Variant report

Variant	rs4846631
Chromosome Location	chr1:216851622-216851623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:216846058..216848011-chr1:216851405..216853353,2	MCF-7	breast:
2	chr1:216850273..216852921-chr1:216856415..216858724,2	K562	blood:
3	chr1:216851090..216851852-chr8:82074489..82075310,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10442689	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10442690	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10746365	0.87[CEU][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap]
rs10779274	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10863263	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11117655	0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12034601	0.82[CHB][hapmap]
rs12728283	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1339341	0.87[CEU][hapmap]
rs1416612	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1416613	1.00[CEU][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17043513	0.82[CHB][hapmap]
rs1856520	0.87[CEU][hapmap]
rs1856521	0.87[CEU][hapmap]
rs1953520	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2211118	0.87[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap]
rs2789725	0.89[CHD][hapmap];0.95[GIH][hapmap];0.82[ASN][1000 genomes]
rs2813699	0.86[ASN][1000 genomes]
rs2820883	0.86[CHD][hapmap];0.95[GIH][hapmap]
rs2820884	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2820885	0.86[CEU][hapmap]
rs3900668	0.87[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap]
rs3929878	0.81[AMR][1000 genomes]
rs4426040	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730968	0.87[CEU][hapmap]
rs7521774	0.88[CHB][hapmap]
rs7529655	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs946465	1.00[CEU][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs946466	1.00[CEU][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs946467	0.87[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4846631	ANGEL2	cis	parietal	SCAN
rs4846631	TGFB2	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
6	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
7	chr1:216840400-216853600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:216842200-216855400	Weak transcription	Fetal Stomach	stomach
9	chr1:216844000-216860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:216844200-216861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:216844800-216852400	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:216848200-216852000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:216849400-216851800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:216850600-216851800	Weak transcription	Brain Anterior Caudate	brain
15	chr1:216850800-216852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:216850800-216860000	Weak transcription	Left Ventricle	heart
17	chr1:216851000-216855400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:216851000-216866000	Weak transcription	Placenta	Placenta

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