Variant report

Variant	rs4846655
Chromosome Location	chr1:220761933-220761934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10495149	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10746403	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10779412	0.95[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10779413	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10779414	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10863557	0.80[AMR][1000 genomes]
rs10863561	0.83[ASN][1000 genomes]
rs11118565	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11118566	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11118567	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11118570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118573	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118576	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118579	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118584	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11118588	0.83[ASN][1000 genomes]
rs11588721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1193032	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12044432	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12126252	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12408540	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs12735691	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1933001	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2095669	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2152836	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2244448	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2378400	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2589581	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2589586	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2589589	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2786598	0.80[EUR][1000 genomes]
rs2786606	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2786610	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2786617	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2889895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs3753873	0.81[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap]
rs3753874	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes]
rs3767319	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs3767320	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3767321	0.95[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3767323	0.95[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3820347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3899315	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3905814	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4120669	0.81[CHB][hapmap]
rs4338357	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4846326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4846327	0.81[ASN][1000 genomes]
rs4846653	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6541154	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6675368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6695583	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7556280	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9430949	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220748000-220762200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:220748200-220762200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:220748200-220769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:220748400-220762400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:220748400-220767200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:220748600-220769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:220748800-220770400	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:220749000-220767000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
11	chr1:220750000-220767000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:220750400-220767000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:220751200-220763200	Weak transcription	Fetal Brain Female	brain
14	chr1:220751800-220762400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
16	chr1:220752400-220762800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:220752400-220772200	Weak transcription	Fetal Brain Male	brain
18	chr1:220752400-220775000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:220752600-220762400	Weak transcription	Adipose Nuclei	Adipose
20	chr1:220752600-220764000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:220752600-220768800	Weak transcription	Esophagus	oesophagus
22	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
23	chr1:220753000-220763200	Weak transcription	Fetal Heart	heart
24	chr1:220753200-220766400	Weak transcription	HMEC	breast
25	chr1:220753400-220778400	Weak transcription	NHEK	skin
26	chr1:220753800-220762200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:220753800-220767000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:220754800-220764000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:220756000-220767000	Weak transcription	Brain Germinal Matrix	brain
30	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:220756600-220767200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr1:220756600-220775000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:220758000-220765800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:220759800-220762400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:220760200-220762400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr1:220761200-220764400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr1:220761600-220767400	Weak transcription	Right Ventricle	heart

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