Variant report

Variant	rs4847255
Chromosome Location	chr1:94207468-94207469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10782966	0.81[EUR][1000 genomes]
rs10782967	0.81[EUR][1000 genomes]
rs1980083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747039	0.81[EUR][1000 genomes]
rs2747041	0.81[EUR][1000 genomes]
rs2818160	0.81[EUR][1000 genomes]
rs2818162	0.81[EUR][1000 genomes]
rs4075523	0.81[EUR][1000 genomes]
rs4240955	0.81[EUR][1000 genomes]
rs4240956	0.81[EUR][1000 genomes]
rs4314890	0.81[EUR][1000 genomes]
rs4847256	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8179391	0.81[EUR][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4847255	RP11-488P3.1	cis	Adipose Subcutaneous	GTEx
rs4847255	RP11-488P3.1	cis	Heart Left Ventricle	GTEx
rs4847255	RP11-488P3.1	cis	Thyroid	GTEx
rs4847255	RP11-488P3.1	cis	Muscle Skeletal	GTEx
rs4847255	RP11-488P3.1	cis	Esophagus Muscularis	GTEx
rs4847255	RP11-488P3.1	cis	Artery Tibial	GTEx
rs4847255	RP11-488P3.1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94199400-94217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:94204000-94208200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:94204800-94207800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:94205000-94209400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:94205400-94208000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:94205800-94209200	Enhancers	HepG2	liver
7	chr1:94206000-94210600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:94206000-94212600	Weak transcription	HMEC	breast
9	chr1:94206200-94209400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:94206200-94209400	Weak transcription	NHEK	skin
11	chr1:94206200-94211600	Weak transcription	Spleen	Spleen
12	chr1:94206600-94209400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:94206800-94210000	Weak transcription	Left Ventricle	heart
14	chr1:94206800-94212400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:94206800-94212400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:94207000-94208600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:94207000-94210000	Weak transcription	Fetal Lung	lung
18	chr1:94207000-94211200	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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