Variant report

Variant	rs4847258
Chromosome Location	chr1:94219943-94219944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94213369..94215810-chr1:94218586..94221367,2	MCF-7	breast:
2	chr1:94145323..94148892-chr1:94219465..94224318,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

rs_ID	r²[population]
rs12134359	1.00[YRI][hapmap]
rs12140446	1.00[YRI][hapmap]
rs2747046	1.00[YRI][hapmap]

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94215600-94220000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr1:94215600-94220600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:94215800-94220200	Enhancers	Fetal Lung	lung
4	chr1:94216000-94224800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:94216200-94220000	Genic enhancers	HMEC	breast
6	chr1:94216400-94223800	Weak transcription	Fetal Intestine Small	intestine
7	chr1:94216600-94220600	Enhancers	Placenta	Placenta
8	chr1:94216800-94221200	Weak transcription	Fetal Intestine Large	intestine
9	chr1:94216800-94223000	Enhancers	Osteobl	bone
10	chr1:94216800-94224400	Weak transcription	Right Atrium	heart
11	chr1:94217200-94221600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:94217400-94220600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:94217600-94223200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:94218000-94220000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr1:94218000-94222400	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:94218000-94222600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:94218000-94222800	Weak transcription	Brain Anterior Caudate	brain
18	chr1:94218000-94223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:94218000-94223800	Weak transcription	Thymus	Thymus
20	chr1:94218000-94224200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:94218400-94222200	Weak transcription	Left Ventricle	heart
22	chr1:94218400-94222600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:94218400-94222800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:94218400-94222800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:94218600-94220600	Enhancers	HepG2	liver
26	chr1:94218600-94222600	Enhancers	NHDF-Ad	bronchial
27	chr1:94218800-94220600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:94218800-94222600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:94218800-94223600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:94218800-94225200	Enhancers	NHLF	lung
31	chr1:94219000-94220800	Enhancers	HUVEC	blood vessel
32	chr1:94219000-94221800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:94219000-94221800	Enhancers	NHEK	skin
34	chr1:94219200-94220000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:94219200-94220000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr1:94219200-94220600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:94219200-94220600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:94219200-94220800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:94219400-94220000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:94219400-94220000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr1:94219400-94220000	Enhancers	Aorta	Aorta
42	chr1:94219400-94220000	Enhancers	Brain Cingulate Gyrus	brain
43	chr1:94219400-94220000	Enhancers	Ovary	ovary
44	chr1:94219400-94220200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:94219400-94220200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:94219400-94220400	Enhancers	Adipose Nuclei	Adipose
47	chr1:94219400-94220600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:94219400-94220600	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr1:94219600-94220000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:94219600-94220000	Flanking Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links