Variant report

Variant	rs4856203
Chromosome Location	chr3:81437140-81437141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11922101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13319440	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3821555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59161789	0.84[ASN][1000 genomes]
rs60844651	0.84[ASN][1000 genomes]
rs6762839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73853334	0.88[ASN][1000 genomes]
rs7629051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7652717	0.84[ASN][1000 genomes]
rs9309873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9813324	0.94[EUR][1000 genomes]
rs9815184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9820089	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9828209	0.84[ASN][1000 genomes]
rs9828883	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9842657	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9848657	0.84[ASN][1000 genomes]
rs9865935	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9876575	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv963563	chr3:81426328-81439262	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81435600-81437400	Enhancers	Fetal Brain Male	brain
2	chr3:81436200-81446600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:81436400-81441400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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