Variant report

Variant	rs4858498
Chromosome Location	chr3:23357726-23357727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1027380	0.96[ASN][1000 genomes]
rs11711630	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11715107	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13087416	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13095887	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1390083	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1495133	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1495134	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1552931	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17342342	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2036045	0.95[CEU][hapmap]
rs2047340	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2055155	0.93[ASN][1000 genomes]
rs2088129	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2132145	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2132147	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2132148	0.91[CEU][hapmap]
rs2132149	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2201481	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2359760	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36073188	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4293660	0.88[ASN][1000 genomes]
rs4334589	0.88[ASN][1000 genomes]
rs4858065	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858066	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4858488	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6550751	0.87[AMR][1000 genomes]
rs6769959	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6790185	0.96[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6806387	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73149661	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7618910	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7629327	0.99[ASN][1000 genomes]
rs7635882	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7636532	0.90[ASN][1000 genomes]
rs7648425	0.97[ASN][1000 genomes]
rs778493	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs903519	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9826103	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9836135	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9840015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9844558	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9848331	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23337600-23358400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:23345800-23358600	Weak transcription	Fetal Stomach	stomach
3	chr3:23349200-23357800	Weak transcription	Lung	lung
4	chr3:23350600-23366400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:23350800-23362600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:23351000-23362400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:23353400-23358400	Enhancers	HSMMtube	muscle
8	chr3:23353600-23357800	Enhancers	HSMM	muscle
9	chr3:23353800-23362800	Weak transcription	Left Ventricle	heart
10	chr3:23355200-23365400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:23355800-23358400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:23355800-23362800	Weak transcription	Esophagus	oesophagus
13	chr3:23355800-23366000	Weak transcription	Ovary	ovary
14	chr3:23356400-23358400	Enhancers	Adipose Nuclei	Adipose
15	chr3:23356400-23358800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:23356800-23361400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:23356800-23365400	Weak transcription	Brain Anterior Caudate	brain
18	chr3:23356800-23367600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:23357000-23359000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:23357000-23378800	Weak transcription	Brain Angular Gyrus	brain
21	chr3:23357200-23358600	Enhancers	Psoas Muscle	Psoas
22	chr3:23357200-23359000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:23357400-23358400	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:23357400-23358400	Weak transcription	Thymus	Thymus
25	chr3:23357400-23358600	Enhancers	Right Atrium	heart
26	chr3:23357600-23361200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:23357600-23366600	Weak transcription	Brain Substantia Nigra	brain

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