The 2.0 version of rSNPBase

Variant report

Variant rs4858517
Chromosome Location chr3:23637677-23637678
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23606000-23643000 Weak transcription Primary T cells from cord blood blood
2 chr3:23607000-23640400 Weak transcription Brain Substantia Nigra brain
3 chr3:23609400-23637800 Weak transcription HSMMtube muscle
4 chr3:23621000-23642800 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr3:23622400-23637800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr3:23624400-23641600 Weak transcription Stomach Smooth Muscle stomach
7 chr3:23625400-23637800 Weak transcription H9 Cell Line embryonic stem cell
8 chr3:23628800-23647200 Weak transcription Brain Inferior Temporal Lobe brain
9 chr3:23629800-23637800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr3:23629800-23640800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr3:23630000-23637800 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr3:23630000-23637800 Weak transcription Aorta Aorta
13 chr3:23630600-23641000 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr3:23631400-23637800 Weak transcription Esophagus oesophagus
15 chr3:23631400-23643200 Weak transcription Left Ventricle heart
16 chr3:23631600-23637800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr3:23631600-23637800 Weak transcription HSMM muscle
18 chr3:23631800-23637800 Weak transcription Liver Liver
19 chr3:23632200-23637800 Weak transcription Brain Anterior Caudate brain
20 chr3:23632600-23640600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr3:23632600-23642400 Weak transcription Brain Angular Gyrus brain
22 chr3:23632800-23637800 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr3:23632800-23637800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr3:23632800-23637800 Weak transcription Adipose Nuclei Adipose
25 chr3:23632800-23637800 Weak transcription Ovary ovary
26 chr3:23632800-23638000 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr3:23632800-23643200 Weak transcription Right Ventricle heart
28 chr3:23632800-23647200 Weak transcription Brain Cingulate Gyrus brain
29 chr3:23633200-23638000 Weak transcription Fetal Lung lung
30 chr3:23633400-23637800 Weak transcription Fetal Stomach stomach
31 chr3:23634600-23641600 Weak transcription Fetal Muscle Trunk muscle
32 chr3:23635000-23640600 Weak transcription Primary hematopoietic stem cells blood
33 chr3:23635400-23642000 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr3:23635600-23637800 Weak transcription Primary B cells from peripheral blood blood
35 chr3:23635600-23638800 Strong transcription Primary B cells from cord blood blood
36 chr3:23635800-23641400 Weak transcription Psoas Muscle Psoas
37 chr3:23636400-23637800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr3:23636400-23637800 Weak transcription Fetal Thymus thymus
39 chr3:23636600-23641400 Weak transcription HUES48 Cell Line embryonic stem cell
40 chr3:23636800-23637800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr3:23636800-23641600 Weak transcription NHLF lung
42 chr3:23637000-23638200 Weak transcription A549 lung
43 chr3:23637000-23641000 Weak transcription Muscle Satellite Cultured Cells --
44 chr3:23637000-23641600 Weak transcription NHDF-Ad bronchial
45 chr3:23637400-23637800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr3:23637400-23638000 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr3:23637600-23637800 Enhancers Fetal Heart heart
48 chr3:23637600-23637800 Enhancers Fetal Kidney kidney
49 chr3:23637600-23638200 ZNF genes & repeats GM12878-XiMat blood

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Last update: Aug 31, 2015