Variant report

Variant	rs486524
Chromosome Location	chr11:56934532-56934533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11820215	0.82[CHB][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap]
rs2077190	0.82[CHB][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap]
rs4442567	0.85[ASN][1000 genomes]
rs480586	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs489379	0.94[ASN][1000 genomes]
rs514354	0.87[ASN][1000 genomes]
rs542107	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs567766	0.95[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.87[ASN][1000 genomes]
rs609763	0.95[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.88[ASN][1000 genomes]
rs622932	0.95[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs646146	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs648409	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs652068	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs664437	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs948851	0.82[CHB][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56932200-56934800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:56932800-56935000	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:56933800-56935000	Enhancers	Fetal Intestine Large	intestine
4	chr11:56934200-56935400	Enhancers	Liver	Liver
5	chr11:56934200-56937000	Enhancers	Stomach Mucosa	stomach
6	chr11:56934400-56935200	Enhancers	Colon Smooth Muscle	Colon
7	chr11:56934400-56935200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr11:56934400-56935400	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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