Variant report

Variant	rs4869195
Chromosome Location	chr5:92694005-92694006
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10064251	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10072317	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10463227	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11135387	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12152903	0.93[ASN][1000 genomes]
rs1471289	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs187931	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2343708	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs269696	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs269700	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs269701	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs269702	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs269703	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs269706	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs269707	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869111	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6420123	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs898597	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9314085	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs984645	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92691200-92694600	Enhancers	HUVEC	blood vessel
2	chr5:92692000-92694800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:92692200-92696800	Enhancers	HMEC	breast
4	chr5:92692400-92695000	Weak transcription	HSMM	muscle
5	chr5:92693600-92694400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:92693600-92695200	Enhancers	Hela-S3	cervix
7	chr5:92693600-92695400	Enhancers	Osteobl	bone
8	chr5:92693600-92696000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:92693600-92696200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:92693800-92695800	Enhancers	Fetal Lung	lung
11	chr5:92694000-92694600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:92694000-92694600	Weak transcription	Fetal Kidney	kidney
13	chr5:92694000-92694800	Weak transcription	NH-A	brain
14	chr5:92694000-92695000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:92694000-92695000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:92694000-92695000	Weak transcription	NHEK	skin
17	chr5:92694000-92695600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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