Variant report

Variant	rs4869928
Chromosome Location	chr6:151001334-151001335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150997606..151001974-chr6:151004328..151007109,4	K562	blood:
2	chr6:150999388..151001415-chr6:151001884..151004556,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12664686	0.81[CEU][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17080073	0.81[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17080087	0.86[AFR][1000 genomes]
rs17080108	0.81[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345745	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4036092	0.83[EUR][1000 genomes]
rs4869926	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869927	0.81[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869929	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4869930	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4869931	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55646755	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58824807	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59466561	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434120	0.84[AFR][1000 genomes]
rs62434125	0.90[AFR][1000 genomes]
rs6899782	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908127	0.81[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929743	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73010188	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478775	0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9478780	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9478783	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9480514	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9480526	0.81[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480528	0.81[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480530	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480531	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9480533	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9885650	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9885699	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9885836	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150975600-151002800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:150980600-151008800	Weak transcription	Gastric	stomach
3	chr6:150980800-151014800	Weak transcription	Pancreas	Pancrea
4	chr6:150987600-151002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150987800-151001400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:150989400-151007800	Weak transcription	Ovary	ovary
7	chr6:150990400-151003200	Weak transcription	Left Ventricle	heart
8	chr6:150990600-151002800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:150990600-151008800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:150990600-151016600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:150990800-151003200	Weak transcription	Adipose Nuclei	Adipose
12	chr6:150990800-151011800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:150995000-151002200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:150995000-151008800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:150995200-151003000	Weak transcription	Esophagus	oesophagus
16	chr6:150995200-151003400	Weak transcription	Placenta	Placenta
17	chr6:150995400-151005400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:150995400-151008800	Weak transcription	Small Intestine	intestine
19	chr6:150995600-151006000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:150995600-151006200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:150996200-151003600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:150996600-151008000	Weak transcription	Fetal Intestine Large	intestine
23	chr6:150997800-151001600	Weak transcription	Fetal Kidney	kidney
24	chr6:150998200-151003400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:150998200-151006000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:150998800-151002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:150998800-151003400	Weak transcription	Fetal Intestine Small	intestine
28	chr6:150999000-151001600	Weak transcription	Fetal Thymus	thymus
29	chr6:150999000-151003000	Weak transcription	Fetal Stomach	stomach
30	chr6:151000600-151002800	Enhancers	Primary B cells from cord blood	blood
31	chr6:151000800-151010000	Enhancers	Primary B cells from peripheral blood	blood
32	chr6:151001000-151006600	Enhancers	Spleen	Spleen
33	chr6:151001200-151003000	Weak transcription	Lung	lung
34	chr6:151001200-151003400	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links