Variant report

Variant	rs4869932
Chromosome Location	chr6:151016200-151016201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:151009911..151013562-chr6:151014768..151017734,5	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10085221	0.87[AFR][1000 genomes]
rs11965555	0.87[CEU][hapmap]
rs11968779	1.00[JPT][hapmap]
rs12664155	0.85[CEU][hapmap]
rs1352975	1.00[JPT][hapmap]
rs17080012	1.00[JPT][hapmap]
rs17080212	0.85[CEU][hapmap]
rs17080238	0.85[CEU][hapmap]
rs1964631	0.87[AFR][1000 genomes]
rs1968999	0.87[AFR][1000 genomes]
rs201531	0.87[AFR][1000 genomes]
rs2279628	0.85[CEU][hapmap]
rs2345669	1.00[JPT][hapmap]
rs275348	1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs3734408	0.87[CEU][hapmap]
rs3734409	0.87[CEU][hapmap]
rs3734410	0.87[CEU][hapmap]
rs3734411	0.85[CEU][hapmap]
rs4869689	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4869921	1.00[JPT][hapmap]
rs4869922	1.00[JPT][hapmap]
rs4869924	1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs4869925	0.87[AFR][1000 genomes]
rs4869934	0.85[EUR][1000 genomes]
rs4869935	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4869936	0.85[EUR][1000 genomes]
rs4869938	0.85[EUR][1000 genomes]
rs4869939	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4870533	1.00[JPT][hapmap]
rs4870534	1.00[JPT][hapmap]
rs4870535	1.00[JPT][hapmap]
rs4870537	1.00[JPT][hapmap]
rs5029652	0.85[EUR][1000 genomes]
rs6902743	0.85[EUR][1000 genomes]
rs73004397	0.87[AFR][1000 genomes]
rs7748886	0.85[CEU][hapmap]
rs7772795	0.85[CEU][hapmap]
rs9478767	1.00[JPT][hapmap]
rs9478769	1.00[JPT][hapmap]
rs9478770	1.00[JPT][hapmap]
rs9478771	1.00[JPT][hapmap]
rs9478772	1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs9478773	1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs9478774	1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs9478777	1.00[JPT][hapmap]
rs9478784	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9478786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9478787	0.88[EUR][1000 genomes]
rs9478790	0.85[CEU][hapmap]
rs9478791	0.85[CEU][hapmap]
rs9480490	1.00[JPT][hapmap]
rs9480492	1.00[JPT][hapmap]
rs9480493	1.00[JPT][hapmap]
rs9480494	1.00[JPT][hapmap]
rs9480495	1.00[JPT][hapmap]
rs9480496	1.00[JPT][hapmap]
rs9480497	1.00[JPT][hapmap]
rs9480503	1.00[JPT][hapmap]
rs9480505	1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs9480511	1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs9480516	1.00[JPT][hapmap]
rs9480517	1.00[JPT][hapmap]
rs9480518	1.00[JPT][hapmap]
rs9480521	1.00[JPT][hapmap]
rs9480522	1.00[JPT][hapmap]
rs9480534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480535	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480536	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9480548	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs9480549	0.85[EUR][1000 genomes]
rs9480550	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs9480551	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs9918380	0.87[CEU][hapmap]
rs9986516	0.85[EUR][1000 genomes]
rs9986520	0.85[EUR][1000 genomes]
rs9986597	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150990600-151016600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:151005000-151017400	Weak transcription	Aorta	Aorta
3	chr6:151005800-151018400	Weak transcription	Psoas Muscle	Psoas
4	chr6:151006000-151018400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:151006800-151017200	Weak transcription	Fetal Stomach	stomach
6	chr6:151008800-151016600	Weak transcription	Fetal Thymus	thymus
7	chr6:151009000-151018400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:151009000-151021200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:151009400-151016800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:151009400-151017200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:151009400-151017200	Weak transcription	Fetal Lung	lung
12	chr6:151009800-151018600	Weak transcription	Ovary	ovary
13	chr6:151012200-151018400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:151012200-151023800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:151012400-151018400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:151013000-151016200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:151013000-151016600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:151013000-151020600	Enhancers	Primary B cells from cord blood	blood
19	chr6:151013200-151016200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:151013200-151018600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:151014200-151016200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:151014200-151016600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:151014600-151021000	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:151015000-151017200	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:151015000-151017400	Weak transcription	Brain Anterior Caudate	brain
26	chr6:151015000-151018400	Weak transcription	Placenta	Placenta
27	chr6:151015000-151020600	Weak transcription	Left Ventricle	heart
28	chr6:151015200-151016600	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:151015200-151016600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:151015200-151017000	Weak transcription	Adipose Nuclei	Adipose
31	chr6:151015200-151017000	Weak transcription	Fetal Heart	heart
32	chr6:151015200-151017400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:151015200-151017400	Weak transcription	Lung	lung
34	chr6:151015200-151017600	Weak transcription	Spleen	Spleen
35	chr6:151015200-151033200	Weak transcription	Right Atrium	heart
36	chr6:151015400-151016800	Weak transcription	Brain Substantia Nigra	brain
37	chr6:151015400-151017400	Weak transcription	Thymus	Thymus
38	chr6:151015400-151018800	Weak transcription	GM12878-XiMat	blood
39	chr6:151015400-151025600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:151016000-151016800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:151016000-151017800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:151016000-151017800	Enhancers	Fetal Kidney	kidney
43	chr6:151016000-151017800	Enhancers	Rectal Smooth Muscle	rectum
44	chr6:151016200-151016800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:151016200-151017000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:151016200-151017000	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr6:151016200-151017400	Enhancers	Brain Hippocampus Middle	brain

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