Variant report

Variant	rs4873082
Chromosome Location	chr8:49226873-49226874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1027966	0.89[ASN][1000 genomes]
rs10957025	0.81[ASN][1000 genomes]
rs10957026	0.98[ASN][1000 genomes]
rs13273513	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16936623	0.85[ASN][1000 genomes]
rs34664131	0.80[ASN][1000 genomes]
rs4873274	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1018242	chr8:49190915-49243694	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539600	chr8:49190915-49243694	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49218200-49228600	Weak transcription	Esophagus	oesophagus
2	chr8:49219200-49227400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr8:49219200-49228000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:49222400-49227200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:49222400-49227800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:49222400-49231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:49224400-49231000	Weak transcription	Ovary	ovary
8	chr8:49225800-49231400	Enhancers	Fetal Stomach	stomach
9	chr8:49226400-49228200	Enhancers	Fetal Lung	lung
10	chr8:49226600-49227800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:49226600-49231000	Weak transcription	Gastric	stomach
12	chr8:49226600-49231400	Weak transcription	Fetal Kidney	kidney
13	chr8:49226600-49231600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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