Variant report

Variant	rs4873092
Chromosome Location	chr8:49974053-49974054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49972978..49975777-chr8:49977348..49979719,2	K562	blood:
2	chr8:49966430..49970191-chr8:49971384..49975225,5	K562	blood:

Variant related genes	Relation type
ENSG00000168333	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10105794	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10435574	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10435612	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504070	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504072	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808744	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10808745	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10957337	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10957356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957357	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11778863	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11784268	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11785310	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11990854	1.00[YRI][hapmap]
rs11997959	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12056536	0.84[EUR][1000 genomes]
rs12156111	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12546490	0.91[EUR][1000 genomes]
rs12546839	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12548464	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12549138	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1511359	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1511365	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17644494	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2137013	1.00[YRI][hapmap]
rs2292399	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28685207	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs341801	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs341802	0.83[EUR][1000 genomes]
rs341809	0.80[EUR][1000 genomes]
rs341813	0.83[EUR][1000 genomes]
rs35282337	0.91[EUR][1000 genomes]
rs4348510	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4406405	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4493917	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4493918	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873093	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs4873096	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873098	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4873300	0.84[EUR][1000 genomes]
rs4873304	0.91[EUR][1000 genomes]
rs4873306	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873307	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873309	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873312	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873314	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873317	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55795863	0.84[EUR][1000 genomes]
rs55920380	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55948643	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56057508	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56074306	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56078938	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57085792	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59064792	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60449482	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62507167	0.86[EUR][1000 genomes]
rs62507177	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62507178	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62507245	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62507246	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62507247	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62507251	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62507252	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62507253	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6472220	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6997703	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7005693	1.00[YRI][hapmap]
rs7011891	1.00[YRI][hapmap]
rs7817571	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7820270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298106	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643394	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643395	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs974780	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49972000-49977800	Weak transcription	Psoas Muscle	Psoas
2	chr8:49972200-49974600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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