Variant report
| Variant | rs4873300 |
|---|---|
| Chromosome Location | chr8:49902201-49902202 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:49895549..49898241-chr8:49900621..49903477,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10504070 | 0.84[EUR][1000 genomes] |
| rs10957337 | 0.86[EUR][1000 genomes] |
| rs10957356 | 0.84[EUR][1000 genomes] |
| rs10957357 | 0.91[CEU][hapmap] |
| rs11778863 | 0.87[EUR][1000 genomes] |
| rs11784268 | 0.87[EUR][1000 genomes] |
| rs12056536 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12546490 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1511365 | 0.84[EUR][1000 genomes] |
| rs17642290 | 0.96[ASN][1000 genomes] |
| rs2292399 | 0.91[CEU][hapmap] |
| rs35282337 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4406405 | 0.87[EUR][1000 genomes] |
| rs4873092 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs4873304 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4873306 | 0.87[EUR][1000 genomes] |
| rs4873307 | 0.87[EUR][1000 genomes] |
| rs4873312 | 0.91[CEU][hapmap] |
| rs55795863 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56074306 | 0.87[EUR][1000 genomes] |
| rs56078938 | 0.87[EUR][1000 genomes] |
| rs60449482 | 0.84[EUR][1000 genomes] |
| rs62507167 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62507177 | 0.85[EUR][1000 genomes] |
| rs62507178 | 0.87[EUR][1000 genomes] |
| rs7820270 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs974780 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024584 | chr8:49879137-49906780 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 2 | nsv6181 | chr8:49885342-49930514 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:49901600-49902600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
